Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AACH39_RS01400 Genome accession   NZ_AP029060
Coordinates   309361..310722 (+) Length   453 a.a.
NCBI ID   WP_338620734.1    Uniprot ID   -
Organism   Paludibacterium sp. THUN1379     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 304361..315722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH39_RS01365 (THUN1379_02640) - 304566..304757 (-) 192 WP_215776515.1 hypothetical protein -
  AACH39_RS01370 (THUN1379_02650) - 304775..304936 (-) 162 WP_215776514.1 hypothetical protein -
  AACH39_RS01375 (THUN1379_02660) hpnC 305104..305916 (+) 813 WP_215776513.1 squalene synthase HpnC -
  AACH39_RS01380 (THUN1379_02670) hpnD 305943..306788 (+) 846 WP_338620732.1 presqualene diphosphate synthase HpnD -
  AACH39_RS01385 (THUN1379_02680) hpnE 306755..308077 (+) 1323 WP_338620733.1 hydroxysqualene dehydroxylase HpnE -
  AACH39_RS01390 (THUN1379_02690) - 308074..308838 (+) 765 WP_215776511.1 SDR family oxidoreductase -
  AACH39_RS01395 (THUN1379_02700) - 308840..309358 (+) 519 WP_215776509.1 hypothetical protein -
  AACH39_RS01400 (THUN1379_02710) radA 309361..310722 (+) 1362 WP_338620734.1 DNA repair protein RadA Machinery gene
  AACH39_RS01405 (THUN1379_02720) - 310782..311102 (-) 321 WP_215776505.1 DUF2325 domain-containing protein -
  AACH39_RS01410 (THUN1379_02730) - 311181..311957 (-) 777 WP_338620735.1 hypothetical protein -
  AACH39_RS01415 (THUN1379_02740) - 312031..313713 (-) 1683 WP_338620736.1 AarF/UbiB family protein -
  AACH39_RS01420 (THUN1379_02750) - 313776..314492 (+) 717 WP_215776499.1 C40 family peptidase -
  AACH39_RS01425 (THUN1379_02760) - 314596..314808 (+) 213 WP_252346049.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48451.76 Da        Isoelectric Point: 6.8215

>NTDB_id=108340 AACH39_RS01400 WP_338620734.1 309361..310722(+) (radA) [Paludibacterium sp. THUN1379]
MAKSKTVFACTECGGETPKWQGQCPHCGAWNTLTESLAQPAAGSGRYEAWSGTAQVQLLSEVQAEDVPRDSAGIDELDRV
LGGGLVRGAVILIGGDPGIGKSTLLLQALAAMGATRPVLYVSGEESPQQIAMRASRLAVDAGKVRLLSEIRLEAIMAVLK
RDKPEVAVIDSIQTLYTDQVTSAPGSVSQVRECAAQLTRMAKQSGTTLLLVGHVTKEGSLAGPRVLEHMVDTVLYFEGDS
HSSFRMIRAVKNRFGAANELGVFAMTERGLKGVSNPSAIFLSSWRDDVSGACVLVTQEGSRPLLVEVQALVDDAHGFQPK
RLSVGLEQNRLAMLLAVLHRHAGVACFDQDVFLNAVGGVKITEPAADLALILAMVSSLRNRPLPPKMVVFGEVGLAGEVR
PVTRGQERLREAAKLGFTRAIVPMANRPRQEIEGLEVIGVDRLEQAVDYCRGQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=108340 AACH39_RS01400 WP_338620734.1 309361..310722(+) (radA) [Paludibacterium sp. THUN1379]
ATGGCCAAAAGTAAAACCGTTTTTGCCTGTACCGAATGTGGCGGCGAAACCCCCAAGTGGCAGGGGCAGTGCCCGCATTG
TGGTGCCTGGAATACTCTGACTGAATCGCTGGCGCAACCTGCTGCCGGCAGCGGTCGCTATGAAGCCTGGAGCGGCACCG
CCCAGGTGCAGTTGCTCAGTGAGGTGCAGGCCGAAGACGTGCCGCGCGACAGTGCCGGCATTGACGAGCTGGACCGGGTG
CTGGGCGGTGGCCTGGTGCGCGGGGCGGTCATCCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACCTTGCTGCTGCA
GGCGCTGGCTGCCATGGGCGCCACGCGGCCTGTGCTGTATGTCTCCGGTGAAGAGTCGCCGCAGCAGATTGCCATGCGCG
CCTCGCGGCTGGCCGTGGATGCCGGCAAGGTGCGTCTGCTGTCTGAAATCCGCCTGGAAGCCATCATGGCGGTGCTCAAG
CGCGACAAGCCGGAAGTGGCGGTGATCGACTCCATTCAGACCCTGTATACCGATCAGGTCACCTCGGCGCCCGGCTCGGT
GTCACAGGTGCGCGAATGCGCTGCCCAGCTGACGCGCATGGCCAAGCAAAGCGGCACGACGCTGTTGCTGGTCGGCCATG
TCACCAAGGAAGGCTCGCTGGCCGGACCGCGCGTGCTCGAACACATGGTCGACACGGTGCTGTATTTCGAGGGGGATTCG
CACTCCAGCTTCCGCATGATTCGCGCGGTGAAGAACCGCTTTGGCGCCGCCAATGAACTGGGCGTGTTTGCCATGACCGA
GCGTGGCCTCAAGGGGGTGTCCAATCCTTCGGCAATTTTCCTGTCCTCCTGGCGAGATGATGTGTCCGGGGCCTGCGTGC
TGGTCACCCAGGAAGGCTCGCGCCCGCTGCTGGTGGAAGTCCAGGCGCTGGTCGACGATGCGCACGGGTTTCAGCCCAAG
CGTCTCAGCGTTGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCACCGCCATGCCGGCGTGGCGTGTTT
TGATCAGGACGTGTTTCTTAATGCGGTCGGCGGCGTAAAGATCACCGAGCCGGCCGCCGACCTGGCGCTGATCCTGGCCA
TGGTGTCCTCGCTGCGCAATCGCCCCCTGCCACCCAAGATGGTGGTGTTTGGCGAGGTGGGGCTGGCCGGCGAGGTCCGG
CCGGTCACGCGTGGACAGGAACGACTGCGCGAGGCCGCCAAGCTGGGCTTTACCCGTGCCATCGTGCCAATGGCCAATCG
GCCGAGGCAGGAAATTGAGGGGCTGGAAGTGATTGGTGTCGACCGGCTGGAACAGGCGGTGGATTACTGCCGCGGCCAGT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.494
  radA Streptococcus mitis SK321

46.12

99.558

0.459
  radA Streptococcus mitis NCTC 12261

45.898

99.558

0.457
  radA Streptococcus pneumoniae Rx1

45.575

99.779

0.455
  radA Streptococcus pneumoniae D39

45.575

99.779

0.455
  radA Streptococcus pneumoniae R6

45.575

99.779

0.455
  radA Streptococcus pneumoniae TIGR4

45.575

99.779

0.455

Multiple sequence alignment