Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACLIN2_RS18615 Genome accession   NZ_CP176856
Coordinates   3693509..3693934 (+) Length   141 a.a.
NCBI ID   WP_411501798.1    Uniprot ID   -
Organism   Brevibacillus centrosporus strain MPB16     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3688509..3698934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIN2_RS18595 (ACLIN2_18595) - 3689284..3690591 (+) 1308 WP_411501794.1 MFS transporter -
  ACLIN2_RS18600 (ACLIN2_18600) - 3690784..3691434 (-) 651 WP_411501795.1 hypothetical protein -
  ACLIN2_RS18605 (ACLIN2_18605) - 3691421..3691942 (-) 522 WP_411501796.1 NUDIX hydrolase -
  ACLIN2_RS18610 (ACLIN2_18610) - 3692062..3693171 (-) 1110 WP_411501797.1 M48 family metallopeptidase -
  ACLIN2_RS18615 (ACLIN2_18615) nucA/comI 3693509..3693934 (+) 426 WP_411501798.1 hypothetical protein Machinery gene
  ACLIN2_RS18620 (ACLIN2_18620) - 3694028..3694639 (-) 612 WP_170184278.1 TetR/AcrR family transcriptional regulator -
  ACLIN2_RS18625 (ACLIN2_18625) - 3695100..3695819 (+) 720 WP_411501799.1 3-ketoacyl-ACP reductase -
  ACLIN2_RS18630 (ACLIN2_18630) - 3695965..3696408 (+) 444 WP_328211191.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACLIN2_RS18635 (ACLIN2_18635) - 3696415..3697818 (+) 1404 WP_411501800.1 MDR family MFS transporter -
  ACLIN2_RS18640 (ACLIN2_18640) lgt 3697848..3698639 (+) 792 WP_411501801.1 prolipoprotein diacylglyceryl transferase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15663.71 Da        Isoelectric Point: 7.1323

>NTDB_id=1083295 ACLIN2_RS18615 WP_411501798.1 3693509..3693934(+) (nucA/comI) [Brevibacillus centrosporus strain MPB16]
MQKKMILFLLAVLFAIGSYFFEQKSPQTQTSNTEADYVLVFPSSKYPQTAEHIRSAIAKGHSAVCTIDRKGADENREQSL
KGVPTKPRYDRDEWPMAMCQEGGSGADIAYISPSDNRGAGSWIANQVEDYPDGTRVKIVIK

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1083295 ACLIN2_RS18615 WP_411501798.1 3693509..3693934(+) (nucA/comI) [Brevibacillus centrosporus strain MPB16]
ATGCAGAAAAAAATGATCCTGTTCCTTCTCGCTGTCTTGTTTGCGATCGGCTCCTATTTCTTCGAGCAGAAGAGCCCGCA
GACGCAGACGAGCAACACAGAAGCGGACTACGTGCTGGTATTCCCGAGCAGCAAATACCCGCAGACGGCCGAGCATATCC
GTTCTGCCATCGCGAAAGGACATTCCGCCGTGTGTACCATCGACCGAAAAGGGGCAGATGAAAACAGGGAGCAATCCCTC
AAAGGCGTTCCCACAAAGCCTCGTTACGACCGAGATGAATGGCCAATGGCGATGTGCCAGGAAGGTGGCAGTGGTGCAGA
TATTGCCTACATCTCTCCATCCGACAATCGCGGGGCTGGCTCCTGGATTGCCAATCAGGTAGAGGACTACCCCGATGGGA
CTCGCGTAAAAATTGTCATCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

60.317

89.362

0.539

Multiple sequence alignment