Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK8QK_RS15560 Genome accession   NZ_CP176818
Coordinates   3185631..3186245 (-) Length   204 a.a.
NCBI ID   WP_008784288.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain PY0607     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3180631..3191245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8QK_RS15545 (ACK8QK_15545) helD 3180855..3182909 (-) 2055 WP_252431389.1 DNA helicase IV -
  ACK8QK_RS15550 (ACK8QK_15550) - 3183035..3183481 (+) 447 WP_003831998.1 YccF domain-containing protein -
  ACK8QK_RS15555 (ACK8QK_15555) yccS 3183500..3185653 (+) 2154 WP_234102438.1 YccS family putative transporter -
  ACK8QK_RS15560 (ACK8QK_15560) sxy/tfoX 3185631..3186245 (-) 615 WP_008784288.1 TfoX/Sxy family DNA transformation protein Regulator
  ACK8QK_RS15565 (ACK8QK_15565) sulA 3186463..3186972 (+) 510 WP_008784287.1 SOS-induced cell division inhibitor SulA -
  ACK8QK_RS15570 (ACK8QK_15570) ompA 3187330..3188376 (+) 1047 WP_020996510.1 porin OmpA -
  ACK8QK_RS15575 (ACK8QK_15575) matP 3188465..3188917 (-) 453 WP_032942905.1 macrodomain Ter protein MatP -
  ACK8QK_RS15580 (ACK8QK_15580) - 3189103..3190863 (+) 1761 WP_128611773.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23153.57 Da        Isoelectric Point: 8.6049

>NTDB_id=1083264 ACK8QK_RS15560 WP_008784288.1 3185631..3186245(-) (sxy/tfoX) [Citrobacter portucalensis strain PY0607]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFALHRLRELPNMTFHLETLLNEAGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1083264 ACK8QK_RS15560 WP_008784288.1 3185631..3186245(-) (sxy/tfoX) [Citrobacter portucalensis strain PY0607]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCTAATGGTGAGCTGTATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGCGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAGCTGGTGTCGCTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTGCCCTGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGTTGA
ATGAAGCTGGAATTAAAGATGAGGGGACCATGCGATCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTTGAGTGGGTAAGTTCTCTTACGCCGGAGCCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

67.647

100

0.676

Multiple sequence alignment