Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   ACK8N4_RS09970 Genome accession   NZ_CP176811
Coordinates   2102141..2104900 (+) Length   919 a.a.
NCBI ID   WP_057388205.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain DG-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2097141..2109900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK8N4_RS09950 (ACK8N4_09950) - 2097776..2098537 (+) 762 WP_033975871.1 class I SAM-dependent methyltransferase -
  ACK8N4_RS09955 (ACK8N4_09955) leuB 2098596..2099678 (+) 1083 WP_033971520.1 3-isopropylmalate dehydrogenase -
  ACK8N4_RS09960 (ACK8N4_09960) asd 2099748..2100860 (+) 1113 WP_057388204.1 aspartate-semialdehyde dehydrogenase -
  ACK8N4_RS09965 (ACK8N4_09965) - 2100962..2101972 (+) 1011 WP_411387842.1 aspartate-semialdehyde dehydrogenase -
  ACK8N4_RS09970 (ACK8N4_09970) fimV 2102141..2104900 (+) 2760 WP_057388205.1 motility hub landmark protein FimV Machinery gene
  ACK8N4_RS09975 (ACK8N4_09975) truA 2104922..2105779 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  ACK8N4_RS09980 (ACK8N4_09980) - 2105869..2106504 (+) 636 WP_033971512.1 phosphoribosylanthranilate isomerase -
  ACK8N4_RS09985 (ACK8N4_09985) accD 2106773..2107645 (+) 873 WP_057388206.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  ACK8N4_RS09990 (ACK8N4_09990) folC 2107642..2108931 (+) 1290 WP_039028099.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  ACK8N4_RS09995 (ACK8N4_09995) - 2108935..2109594 (+) 660 WP_003147893.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96919.13 Da        Isoelectric Point: 3.9468

>NTDB_id=1083215 ACK8N4_RS09970 WP_057388205.1 2102141..2104900(+) (fimV) [Pseudomonas aeruginosa strain DG-1]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRTPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGTAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEDQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQTPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDL
DFGLDFAELAETPSQPRHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPAEPAAPAKSEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=1083215 ACK8N4_RS09970 WP_057388205.1 2102141..2104900(+) (fimV) [Pseudomonas aeruginosa strain DG-1]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGTGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAACCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAACCCCGCAG
GCACCGGCTCCGGTGCGTACCACTGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
TGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCTTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTTCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCTGCGGGCACCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGGAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAACCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGGGCCGACAAGGGCGGGAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGATAGCACTCGCCGCGAGAACGAAGAACTGCAGAGCCGCATGCAGGATCTGCAGAGCCAGCT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTACAAGGGCAGTTGGGCGCCGAAGACCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCAGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCCGCTGCGGCAGCGCCGACTCCTGCTCCGGCCGGAGAAGCACCCGCCGCTCCGGCGCAGACTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAACAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATGCCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAATTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
ATATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTACCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAACTGGATAGCTTCAGCCTCGACGACTTGTCGCTCGACGACAGCGGTCATGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTTGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCTTCGACCGCGGCGGACAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAGGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGACGCGCCTGAAGACAAGCTTTCGGACGACGATTTCCTGCTTTCGCTGAACGACGAGGTGCCCGCCGCGGCGCCCG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCATTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGGCGGAGCCGGCCGCCCCGGCAAAGAGCGAGGACAGTTTCGCCGCCCAGTTGGATGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCT
CCGCACTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCAGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

98.694

100

0.987

Multiple sequence alignment