Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AACH71_RS21275 Genome accession   NZ_AP029050
Coordinates   4164870..4165280 (+) Length   136 a.a.
NCBI ID   WP_103030675.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4159870..4170280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS21245 (BSB_40860) - 4159958..4160191 (-) 234 Protein_4127 helix-turn-helix domain-containing protein -
  AACH71_RS21250 (BSB_40870) - 4160519..4161514 (-) 996 WP_029318099.1 acryloyl-CoA reductase -
  AACH71_RS21255 (BSB_40880) - 4161672..4162265 (+) 594 WP_029318098.1 TetR/AcrR family transcriptional regulator -
  AACH71_RS21260 (BSB_40890) - 4162698..4162876 (+) 179 Protein_4130 hypothetical protein -
  AACH71_RS21265 (BSB_40900) spoIVCA 4162834..4164294 (+) 1461 WP_250533456.1 site-specific DNA recombinase SpoIVCA -
  AACH71_RS21270 (BSB_40910) - 4164322..4164672 (-) 351 Protein_4132 sigma-70 family RNA polymerase sigma factor -
  AACH71_RS21275 (BSB_40920) nucA/comI 4164870..4165280 (+) 411 WP_103030675.1 sporulation-specific Dnase NucB Machinery gene
  AACH71_RS21280 (BSB_40930) - 4165313..4166035 (-) 723 WP_103032335.1 hypothetical protein -
  AACH71_RS21285 - 4166270..4166704 (+) 435 Protein_4135 NAD(P)-binding domain-containing protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15046.04 Da        Isoelectric Point: 4.9203

>NTDB_id=108306 AACH71_RS21275 WP_103030675.1 4164870..4165280(+) (nucA/comI) [Bacillus stercoris strain BST19]
MKKWMAGLFFAAAVLLCVMVPQQIQGASLYDKVLYFPLSRYPETGDHIRDAIAEGHSEICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=108306 AACH71_RS21275 WP_103030675.1 4164870..4165280(+) (nucA/comI) [Bacillus stercoris strain BST19]
ATGAAAAAATGGATGGCAGGCCTGTTTTTTGCTGCAGCAGTTCTTCTTTGTGTAATGGTTCCGCAGCAGATCCAAGGCGC
TTCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACAGGCGATCATATTAGAGATGCGATTGCAG
AGGGACATTCTGAGATTTGCACCATTGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCATTAAAGGGTATCCCGACG
AAGCCGGGCTATGACCGGGATGAATGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGAGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGGGCCGGCTCATGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.091

97.059

0.574

Multiple sequence alignment