Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACK3B6_RS14410 Genome accession   NZ_CP176792
Coordinates   2801861..2802607 (-) Length   248 a.a.
NCBI ID   WP_105953483.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2796861..2807607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS14385 (ACK3B6_14385) mreC 2797269..2798141 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  ACK3B6_RS14390 (ACK3B6_14390) mreB 2798172..2799185 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  ACK3B6_RS14395 (ACK3B6_14395) radC 2799277..2799972 (-) 696 WP_105990281.1 RadC family protein -
  ACK3B6_RS14400 (ACK3B6_14400) - 2800010..2800579 (-) 570 WP_105990280.1 Maf family nucleotide pyrophosphatase -
  ACK3B6_RS14405 (ACK3B6_14405) - 2800730..2801728 (-) 999 WP_416042781.1 SPOR domain-containing protein -
  ACK3B6_RS14410 (ACK3B6_14410) comC 2801861..2802607 (-) 747 WP_105953483.1 prepilin peptidase Machinery gene
  ACK3B6_RS14415 (ACK3B6_14415) - 2802748..2804040 (-) 1293 WP_105953482.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACK3B6_RS14420 (ACK3B6_14420) valS 2804100..2806742 (-) 2643 WP_326326545.1 valine--tRNA ligase -
  ACK3B6_RS14425 (ACK3B6_14425) - 2807191..2807382 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26539.13 Da        Isoelectric Point: 9.6194

>NTDB_id=1083017 ACK3B6_RS14410 WP_105953483.1 2801861..2802607(-) (comC) [Bacillus halotolerans strain BCP32]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
CLFAAAGFRFGLSWELIVALVFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLFAVIGLVLGVKMLAAAFFFSVLIGALYGAAAVLFGRLARKQPIPFAPAIAAGSIFAYLYGDSIIS
FYVKTALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1083017 ACK3B6_RS14410 WP_105953483.1 2801861..2802607(-) (comC) [Bacillus halotolerans strain BCP32]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCCTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAACTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
TGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGGTGTTTCTATCTCTTCTAAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATTATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCGGCTGCCGGTTTTCTTCTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTATTTGCCGTTATCGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCTTTTTTCTTCTCTGTTCTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGATTCCCTTTGCCCCGGCAATTGCGGCAGGAAGTATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAACGGCGTTAGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)

Type IV leader peptidase family (Peptidase_A24)

(100-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.452

100

0.815

Multiple sequence alignment