Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACK3B6_RS12950 Genome accession   NZ_CP176792
Coordinates   2556241..2557008 (-) Length   255 a.a.
NCBI ID   WP_024122086.1    Uniprot ID   A0A9Q4HQQ6
Organism   Bacillus halotolerans strain BCP32     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2551241..2562008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS12930 (ACK3B6_12930) - 2551415..2552227 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  ACK3B6_RS12935 (ACK3B6_12935) ccpN 2552253..2552891 (-) 639 WP_024122084.1 transcriptional regulator CcpN -
  ACK3B6_RS12940 (ACK3B6_12940) glyS 2553025..2555064 (-) 2040 WP_416042754.1 glycine--tRNA ligase subunit beta -
  ACK3B6_RS12945 (ACK3B6_12945) glyQ 2555057..2555944 (-) 888 WP_105953805.1 glycine--tRNA ligase subunit alpha -
  ACK3B6_RS12950 (ACK3B6_12950) recO 2556241..2557008 (-) 768 WP_024122086.1 DNA repair protein RecO Machinery gene
  ACK3B6_RS12955 (ACK3B6_12955) - 2557045..2557188 (-) 144 WP_024122087.1 YqzL family protein -
  ACK3B6_RS12960 (ACK3B6_12960) era 2557332..2558237 (-) 906 WP_416042755.1 GTPase Era -
  ACK3B6_RS12965 (ACK3B6_12965) cdd 2558218..2558628 (-) 411 WP_024122088.1 cytidine deaminase -
  ACK3B6_RS12970 (ACK3B6_12970) - 2558742..2559119 (-) 378 WP_305934807.1 diacylglycerol kinase family protein -
  ACK3B6_RS12975 (ACK3B6_12975) ybeY 2559100..2559573 (-) 474 WP_105953589.1 rRNA maturation RNase YbeY -
  ACK3B6_RS12980 (ACK3B6_12980) pgpH 2559574..2561709 (-) 2136 WP_081638339.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29333.03 Da        Isoelectric Point: 8.3105

>NTDB_id=1083009 ACK3B6_RS12950 WP_024122086.1 2556241..2557008(-) (recO) [Bacillus halotolerans strain BCP32]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAFIAELVDKGTEEKKPNPYLFEFILESFKQLDEGTDPDVITFIVQMKMLAVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFDKDPYKVPIKPQTARLLRLFYYFDLSRIGNVSLKQETKNELKQVIDLYYEEYSGVYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1083009 ACK3B6_RS12950 WP_024122086.1 2556241..2557008(-) (recO) [Bacillus halotolerans strain BCP32]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGTACCAATGATTACGGAGAGACGAATAAAATTGTTACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCCAGAGGAGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCCTAATGCAGAAAACAACAGGCCTCGGAACCCTTCAGCAGGGTGAAATGATTCTCAGCATGAGAGGC
ATCAGAGAGGATTTGTTTTTAACTGCATATGCAGCTTTTATTGCTGAGCTCGTTGACAAAGGCACAGAAGAAAAAAAACC
AAATCCCTATTTGTTTGAATTTATTTTAGAATCTTTTAAACAGCTTGACGAAGGAACAGACCCAGATGTTATTACCTTCA
TTGTTCAAATGAAGATGCTTGCTGTGATGGGACTGTATCCTGAGCTTAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACATTCCATTTTTCTGTTCGCGATAACGGTTTTATTTGCCACCGCTGCTTTGACAAAGACCCTTACAAGGTGCCGATTAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTCGATCTTTCAAGGATTGGCAATGTGTCTTTAAAGCAGGAAA
CGAAAAATGAATTAAAGCAAGTTATTGACTTGTACTACGAAGAATATTCAGGGGTTTATCTGAAATCGAAGCGTTTTTTA
GATCAAATGGAGAGTATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

94.51

100

0.945

Multiple sequence alignment