Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACK3B6_RS11425 Genome accession   NZ_CP176792
Coordinates   2286206..2286826 (+) Length   206 a.a.
NCBI ID   WP_044155259.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2281206..2291826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS11385 (ACK3B6_11385) - 2282343..2282849 (-) 507 WP_202852559.1 PTS glucose transporter subunit IIA -
  ACK3B6_RS11390 (ACK3B6_11390) - 2282986..2283405 (+) 420 WP_248339041.1 Hsp20/alpha crystallin family protein -
  ACK3B6_RS11395 (ACK3B6_11395) - 2283427..2283801 (-) 375 WP_202852560.1 YppG family protein -
  ACK3B6_RS11400 (ACK3B6_11400) - 2283989..2284177 (+) 189 WP_105991748.1 YppF family protein -
  ACK3B6_RS11405 (ACK3B6_11405) - 2284213..2284584 (-) 372 WP_105991747.1 YppE family protein -
  ACK3B6_RS11410 (ACK3B6_11410) - 2284630..2284875 (-) 246 WP_095713163.1 DUF5446 family protein -
  ACK3B6_RS11415 (ACK3B6_11415) sspM 2285073..2285177 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  ACK3B6_RS11420 (ACK3B6_11420) - 2285203..2286165 (-) 963 WP_202852561.1 DUF2515 domain-containing protein -
  ACK3B6_RS11425 (ACK3B6_11425) recU 2286206..2286826 (+) 621 WP_044155259.1 Holliday junction resolvase RecU Machinery gene
  ACK3B6_RS11430 (ACK3B6_11430) - 2286848..2289589 (+) 2742 WP_202852562.1 PBP1A family penicillin-binding protein -
  ACK3B6_RS11435 (ACK3B6_11435) - 2289662..2290156 (-) 495 WP_105954966.1 YpoC family protein -
  ACK3B6_RS11440 (ACK3B6_11440) nth 2290153..2290812 (-) 660 WP_105954965.1 endonuclease III -
  ACK3B6_RS11445 (ACK3B6_11445) dnaD 2290831..2291529 (-) 699 WP_044155229.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23935.07 Da        Isoelectric Point: 9.6373

>NTDB_id=1082997 ACK3B6_RS11425 WP_044155259.1 2286206..2286826(+) (recU) [Bacillus halotolerans strain BCP32]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1082997 ACK3B6_RS11425 WP_044155259.1 2286206..2286826(+) (recU) [Bacillus halotolerans strain BCP32]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGAATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

96.117

100

0.961

Multiple sequence alignment