Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACK3B6_RS08000 Genome accession   NZ_CP176792
Coordinates   1534091..1534369 (+) Length   92 a.a.
NCBI ID   WP_024121253.1    Uniprot ID   A0A9Q4EGS6
Organism   Bacillus halotolerans strain BCP32     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1529091..1539369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS07980 (ACK3B6_07980) - 1530283..1531194 (+) 912 WP_105954156.1 ketopantoate reductase family protein -
  ACK3B6_RS07985 (ACK3B6_07985) - 1531222..1532454 (-) 1233 WP_044156760.1 aminopeptidase -
  ACK3B6_RS07990 (ACK3B6_07990) - 1532568..1532699 (-) 132 WP_105954157.1 protein YkpC -
  ACK3B6_RS07995 (ACK3B6_07995) mreBH 1532802..1533809 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  ACK3B6_RS08000 (ACK3B6_08000) abrB 1534091..1534369 (+) 279 WP_024121253.1 transcriptional regulator AbhA Regulator
  ACK3B6_RS08005 (ACK3B6_08005) kinC 1534560..1535846 (+) 1287 WP_024121254.1 two-component sensor histidine kinase KinC -
  ACK3B6_RS08010 (ACK3B6_08010) - 1535862..1536692 (+) 831 WP_105990745.1 gamma-glutamylcyclotransferase -
  ACK3B6_RS08015 (ACK3B6_08015) ktrC 1536764..1537429 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  ACK3B6_RS08020 (ACK3B6_08020) ade 1537586..1539319 (+) 1734 WP_202852484.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8872

>NTDB_id=1082991 ACK3B6_RS08000 WP_024121253.1 1534091..1534369(+) (abrB) [Bacillus halotolerans strain BCP32]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGICLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1082991 ACK3B6_RS08000 WP_024121253.1 1534091..1534369(+) (abrB) [Bacillus halotolerans strain BCP32]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATCAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCATTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565

Multiple sequence alignment