Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK3BL_RS14835 Genome accession   NZ_CP176786
Coordinates   2983309..2983938 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain XJ23PTE1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2978309..2988938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3BL_RS14820 helD 2978551..2980605 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACK3BL_RS14825 yccF 2980728..2981174 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACK3BL_RS14830 yccS 2981184..2983346 (+) 2163 WP_000875058.1 YccS family putative transporter -
  ACK3BL_RS14835 sxy/tfoX 2983309..2983938 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACK3BL_RS14840 sulA 2984157..2984666 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACK3BL_RS14845 ompA 2985023..2986063 (+) 1041 WP_001400178.1 porin OmpA -
  ACK3BL_RS14850 matP 2986139..2986591 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACK3BL_RS14855 ycbZ 2986777..2988537 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1082951 ACK3BL_RS14835 WP_000839153.1 2983309..2983938(-) (sxy/tfoX) [Escherichia coli strain XJ23PTE1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1082951 ACK3BL_RS14835 WP_000839153.1 2983309..2983938(-) (sxy/tfoX) [Escherichia coli strain XJ23PTE1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment