Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLH0J_RS05140 Genome accession   NZ_CP176771
Coordinates   1139108..1140475 (-) Length   455 a.a.
NCBI ID   WP_411391115.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1134108..1145475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0J_RS05120 (ACLH0J_05120) yjiA 1135204..1136163 (-) 960 WP_411391112.1 GTPase -
  ACLH0J_RS05125 (ACLH0J_05125) - 1136300..1136497 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  ACLH0J_RS05130 (ACLH0J_05130) - 1136513..1138579 (-) 2067 WP_411391113.1 carbon starvation CstA family protein -
  ACLH0J_RS05135 (ACLH0J_05135) - 1138754..1139119 (+) 366 WP_411391114.1 PilZ domain-containing protein -
  ACLH0J_RS05140 (ACLH0J_05140) radA 1139108..1140475 (-) 1368 WP_411391115.1 DNA repair protein RadA Machinery gene
  ACLH0J_RS05145 (ACLH0J_05145) - 1140511..1141059 (-) 549 WP_411391116.1 ankyrin repeat domain-containing protein -
  ACLH0J_RS05150 (ACLH0J_05150) katB 1141195..1142736 (-) 1542 WP_411391117.1 catalase KatB -
  ACLH0J_RS05155 (ACLH0J_05155) mscL 1143024..1143440 (+) 417 WP_010562544.1 large-conductance mechanosensitive channel protein MscL -
  ACLH0J_RS05160 (ACLH0J_05160) - 1143489..1144265 (-) 777 WP_010562543.1 ferredoxin--NADP reductase -
  ACLH0J_RS05165 (ACLH0J_05165) - 1144648..1145358 (+) 711 WP_411391118.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48776.26 Da        Isoelectric Point: 7.1317

>NTDB_id=1082853 ACLH0J_RS05140 WP_411391115.1 1139108..1140475(-) (radA) [Pseudomonas sp. MPB23]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPSGRSGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMKALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1082853 ACLH0J_RS05140 WP_411391115.1 1139108..1140475(-) (radA) [Pseudomonas sp. MPB23]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACTGAATG
TGGTGCGTGGAACACCCTCACGGAGACCATGATCGAAAGCGGCGGCGCCGCGGCGCCCAGCGGCCGGTCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCACGCTTCTCCACAGCGTCCGGTGAACTC
GACCGCGTACTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCAT
CCTGCTGCAAACCCTATGCAGCATCGCCAGCCGCATGAAGGCGTTGTACGTCACCGGCGAAGAATCCCAACAACAGGTGG
CCATGCGGGCCCGTCGCCTCGGTTTGCCCCAGGACCAGTTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCCCGGATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCGCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGCTATGCCAAGCAAAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAGGGCGCATTGGCCGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGCGAATCCGACGGTCGCTTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTGAACGAGCTGGGTGTGTTCGC
CATGACGGATCGGGGGTTGAAAGAAGTCTCCAATCCCTCGGCGATTTTTCTCACACGTGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGCCGCGTCACCCTGGGCCTGGATCAGAACCGCCTGGCGATGCTGTTGGCGGTGCTGCACCGTCACGGCGGCAT
ACCGACCCACGACCAGGACGTGTTCCTCAACGTGGTAGGCGGGGTCAAGGTGCTTGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCCGTGATGTCCAGCCTGCGCAACCGGCCGCTGCCCCACGACCTGCTGGTGTTCGGCGAAGTCGGCCTGTCGGGC
GAAGTGCGACCGGTGCCGAGTGGCCAGGAGCGCCTGAAGGAAGCGGCCAAGCATGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGCCTGGGTTGCAGGTGATTGGAGTGACGCGTCTGGAGCAGGCGCTGGATGCGTTAT
TCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus pneumoniae Rx1

46.957

100

0.475
  radA Streptococcus pneumoniae R6

46.957

100

0.475
  radA Streptococcus pneumoniae TIGR4

46.957

100

0.475
  radA Streptococcus pneumoniae D39

46.957

100

0.475
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment