Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACLH0I_RS25430 Genome accession   NZ_CP176770
Coordinates   5839583..5840950 (-) Length   455 a.a.
NCBI ID   WP_030140305.1    Uniprot ID   A0A0B1YXD7
Organism   Pseudomonas sp. MPB03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5834583..5845950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0I_RS25410 (ACLH0I_25410) yjiA 5835201..5836169 (-) 969 WP_411385680.1 GTPase -
  ACLH0I_RS25415 (ACLH0I_25415) - 5836581..5836778 (-) 198 WP_003182142.1 YbdD/YjiX family protein -
  ACLH0I_RS25420 (ACLH0I_25420) - 5836794..5838860 (-) 2067 WP_411385681.1 carbon starvation CstA family protein -
  ACLH0I_RS25425 (ACLH0I_25425) - 5839019..5839375 (+) 357 WP_411385682.1 PilZ domain-containing protein -
  ACLH0I_RS25430 (ACLH0I_25430) radA 5839583..5840950 (-) 1368 WP_030140305.1 DNA repair protein RadA Machinery gene
  ACLH0I_RS25435 (ACLH0I_25435) - 5840992..5841519 (-) 528 WP_411387558.1 ankyrin repeat domain-containing protein -
  ACLH0I_RS25440 (ACLH0I_25440) katB 5841660..5843201 (-) 1542 WP_411385683.1 catalase KatB -
  ACLH0I_RS25445 (ACLH0I_25445) mscL 5843483..5843896 (+) 414 WP_003205779.1 large-conductance mechanosensitive channel protein MscL -
  ACLH0I_RS25450 (ACLH0I_25450) - 5843951..5844727 (-) 777 WP_250963269.1 ferredoxin--NADP reductase -
  ACLH0I_RS25455 (ACLH0I_25455) - 5845010..5845723 (+) 714 WP_250963270.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48774.24 Da        Isoelectric Point: 6.8987

>NTDB_id=1082843 ACLH0I_RS25430 WP_030140305.1 5839583..5840950(-) (radA) [Pseudomonas sp. MPB03]
MAKAKRMYGCTECGSTFPKWAGQCSECGAWNTLTETMVESGGAAAPTGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1082843 ACLH0I_RS25430 WP_030140305.1 5839583..5840950(-) (radA) [Pseudomonas sp. MPB03]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGCTCGACCTTCCCCAAGTGGGCCGGACAATGCAGTGAATG
CGGAGCCTGGAACACCCTGACCGAAACCATGGTGGAAAGCGGCGGCGCGGCGGCCCCTACCGGGCGCACGGGCTGGGCCG
GCCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGTTTCTCCACCGCGTCCGGTGAATTG
GATCGGGTGCTGGGGGGCGGCTTGGTGGACGGCTCGGTGGTGCTGATCGGTGGCGATCCGGGCATCGGTAAATCCACCAT
CCTGTTGCAAACCTTGTGCAACCTCGCCACGCGCATGCCGGCGTTGTACGTCACGGGCGAAGAGTCCCAGCAACAGGTCG
CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAGACCTGCATCGAAACCATCATTGCC
ACGGCGCGCCTGGAAAAGCCCAAGGTGATGGTCATCGACTCGATCCAGACCATTTTCACCGAACAACTGCAGTCGGCCCC
GGGCGGCGTGTCCCAAGTGCGTGAAAGCGCGGCGTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATTTTCCTGG
TGGGCCATGTCACCAAGGAAGGTGCGTTAGCGGGACCGCGGGTGTTGGAGCACATGGTCGACACCGTGTTGTATTTCGAA
GGCGAATCCGATGGGCGCCTGCGTTTGCTACGGGCGGTGAAGAATCGCTTTGGCGCGGTCAATGAACTGGGGGTGTTCGG
CATGACCGACAGGGGCCTGAAAGAAGTCTCGAACCCGTCGGCGATCTTTCTGACACGTGCCCAGGAAGAAGTCCCCGGTA
GCGTGGTCATGGCAACGTGGGAAGGGACCCGGCCGATGTTGGTCGAGGTGCAGGCGCTGGTGGACGACAGTCACTTGGCG
AACCCACGACGGGTCACCCTGGGCCTGGATCAGAACCGGCTGGCCATGCTGCTGGCGGTATTGCATCGACACGGTGGGAT
CCCGACACATGACCAGGACGTGTTCCTCAATGTCGTGGGTGGGGTCAAGGTACTGGAGACCGCATCCGACCTCGCGTTGA
TGGCGGCGGTCATGTCCAGCCTGCGCAACCGGCCGCTGCCCCATGATCTGTTGGTGTTTGGTGAAGTCGGGCTGTCGGGG
GAAGTGCGACCGGTGCCCAGCGGGCAGGAGCGGCTCAAGGAAGCCGCCAAGCACGGCTTCAAACGCGCCATCGTGCCCAA
GGGGAACGCGCCGAAGGAAGCGCCGGCTGGGTTGCAGATCATTGCAGTGACACGCCTGGAACAGGCGTTGGATGCGTTGT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B1YXD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464

Multiple sequence alignment