Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   AACH71_RS12875 Genome accession   NZ_AP029050
Coordinates   2540723..2541835 (-) Length   370 a.a.
NCBI ID   WP_136654043.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2535723..2546835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS12860 (BSB_24550) gyrA 2535813..2538278 (-) 2466 WP_014662458.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  AACH71_RS12865 (BSB_24560) gyrB 2538489..2540405 (-) 1917 WP_136654058.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AACH71_RS12870 (BSB_24570) remB 2540460..2540705 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  AACH71_RS12875 (BSB_24580) recF 2540723..2541835 (-) 1113 WP_136654043.1 DNA replication/repair protein RecF Machinery gene
  AACH71_RS12880 (BSB_24590) rlbA 2541851..2542066 (-) 216 WP_003219264.1 ribosome maturation protein RlbA -
  AACH71_RS12885 (BSB_24600) dnaN 2542197..2543333 (-) 1137 WP_014662455.1 DNA polymerase III subunit beta -
  AACH71_RS12890 (BSB_24610) dnaA 2543523..2544863 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  AACH71_RS12895 (BSB_24620) rpmH 2545490..2545624 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  AACH71_RS12900 (BSB_24630) rnpA 2545775..2546125 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42306.27 Da        Isoelectric Point: 7.1294

>NTDB_id=108279 AACH71_RS12875 WP_136654043.1 2540723..2541835(-) (recF) [Bacillus stercoris strain BST19]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPVHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIDRGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=108279 AACH71_RS12875 WP_136654043.1 2540723..2541835(-) (recF) [Bacillus stercoris strain BST19]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGTGAAAACGCCCAGGGGAAGACAAACCTTATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACAGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAACTCGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGACCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTAAAACAGCTGCAAACAAGAAAACAAACAGACCGGACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCCGTCCATGCGGGCA
TCTCGAGAGGGCTGGAAGAGCTGACCCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGATCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACAGCATTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.919

100

0.989

Multiple sequence alignment