Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACK1LH_RS13985 Genome accession   NZ_CP176757
Coordinates   2728039..2729763 (-) Length   574 a.a.
NCBI ID   WP_029279802.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2723039..2734763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS13960 (ACK1LH_13960) - 2724222..2724452 (+) 231 WP_029279810.1 DUF2627 domain-containing protein -
  ACK1LH_RS13965 (ACK1LH_13965) - 2724492..2725226 (-) 735 WP_035207067.1 glycerophosphodiester phosphodiesterase -
  ACK1LH_RS13970 (ACK1LH_13970) - 2725268..2725405 (+) 138 WP_081414161.1 YycC family protein -
  ACK1LH_RS13975 (ACK1LH_13975) spo0A 2725473..2726261 (-) 789 WP_029279806.1 sporulation transcription factor Spo0A -
  ACK1LH_RS13980 (ACK1LH_13980) spoIVB 2726565..2727854 (-) 1290 WP_029279804.1 SpoIVB peptidase -
  ACK1LH_RS13985 (ACK1LH_13985) recN 2728039..2729763 (-) 1725 WP_029279802.1 DNA repair protein RecN Machinery gene
  ACK1LH_RS13990 (ACK1LH_13990) ahrC 2729793..2730242 (-) 450 WP_029279800.1 transcriptional regulator AhrC/ArgR -
  ACK1LH_RS13995 (ACK1LH_13995) - 2730424..2731263 (-) 840 WP_035207071.1 TlyA family RNA methyltransferase -
  ACK1LH_RS14000 (ACK1LH_14000) dxs 2731267..2733159 (-) 1893 WP_035207074.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACK1LH_RS14005 (ACK1LH_14005) - 2733518..2734399 (-) 882 WP_029279794.1 polyprenyl synthetase family protein -
  ACK1LH_RS14010 (ACK1LH_14010) - 2734396..2734629 (-) 234 WP_029279792.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64602.46 Da        Isoelectric Point: 4.8829

>NTDB_id=1082787 ACK1LH_RS13985 WP_029279802.1 2728039..2729763(-) (recN) [Metabacillus indicus strain JKLC.Or24]
MLAELSIKNFAIIEALTVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSSEFVRYGEKRAELEGLFLLDDDAHPVLER
CQEFGIDTSDGMIVLRRDISAAGKSICRVNGKLVTIGILREIGQLMIDIHGQHDNQELMNEENHWKLLDQYGSSKINHAL
SSYREIYTTYASLQKKIKQLSENEQEMAHRLDLIQFQLEEIEKADLKLKEDEQLMEEKNEISNFEKVYESLQNSYNSLHG
EQRGLDYIGHSMSHLEEVSSINDSLKEMSETVSNCYYMLEDLSFQIRSELDRLEFDPERLNEIEARLAEITHLKRKYGQS
VEEILEYAAGIEEEIDTIQNRDSHLYKLKNELDSVTKDLVIEASNLTAVRRKSAAELIKNIQQELKELYMEKTKFEVVFG
VRKGHPDSVQIDSVPAKFTENGVDETEFYLSTNPGEPLKPLSKIASGGELSRIMLAMKSIFSKHQGVTSIIFDEVDTGVS
GRVAQAIAEKIYKVSVGSQVLCITHLPQVAAMADTHLFISKETVKGRTKTSVKPLLEEEKIKEVGRMIAGVEVTDLTKQH
AKELLALAEAAKSF

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=1082787 ACK1LH_RS13985 WP_029279802.1 2728039..2729763(-) (recN) [Metabacillus indicus strain JKLC.Or24]
GTGTTAGCAGAACTTTCCATAAAGAACTTTGCCATAATCGAAGCACTGACTGTCTCTTTTGAAAAAGGGCTTACGGTCCT
TACCGGAGAAACAGGAGCTGGAAAATCCATTATTATAGATGCCGTTCATTTGCTGGTAGGAGGAAGAGGGTCATCTGAAT
TTGTCCGCTACGGAGAAAAAAGGGCTGAACTGGAAGGTCTTTTTTTGCTGGATGATGACGCTCATCCGGTCCTTGAAAGA
TGCCAGGAGTTTGGAATTGATACAAGTGACGGGATGATTGTCCTGAGACGCGACATTTCAGCAGCAGGCAAGAGTATTTG
CCGTGTGAACGGAAAGCTTGTGACCATCGGAATTCTCAGGGAAATCGGCCAGCTCATGATTGATATTCACGGCCAGCATG
ATAATCAGGAGCTGATGAATGAAGAAAATCACTGGAAGCTGCTCGATCAGTACGGTTCGTCAAAAATAAACCATGCCCTT
TCGTCATACAGAGAGATTTACACTACATATGCTTCGCTGCAAAAGAAAATCAAACAGCTTTCTGAAAACGAACAGGAAAT
GGCCCACAGGCTTGATCTTATTCAGTTTCAGCTCGAAGAAATTGAAAAAGCTGATTTGAAATTAAAAGAAGACGAACAGC
TCATGGAAGAAAAAAATGAAATCTCCAACTTTGAAAAGGTCTATGAATCCCTGCAGAACAGCTATAATTCCCTTCACGGC
GAACAGAGGGGACTCGACTATATCGGCCATTCCATGAGTCACCTTGAAGAAGTGTCTTCGATTAATGACTCATTGAAAGA
AATGTCAGAAACCGTCTCCAACTGCTACTACATGCTTGAAGATCTGTCGTTTCAGATCCGCAGTGAACTTGACAGGCTTG
AGTTTGACCCGGAGCGGCTAAATGAAATTGAAGCAAGACTTGCGGAGATCACGCATCTGAAGAGAAAGTACGGTCAGAGT
GTAGAGGAAATCCTTGAATATGCAGCAGGAATTGAAGAAGAGATTGATACCATTCAAAACCGCGACAGCCACCTTTATAA
ACTGAAAAACGAACTTGATTCGGTTACGAAGGATCTGGTGATTGAAGCTTCAAACCTGACGGCTGTGCGAAGAAAAAGTG
CTGCTGAGCTGATAAAAAACATCCAGCAGGAGCTTAAAGAACTCTATATGGAAAAAACAAAGTTTGAAGTTGTGTTCGGC
GTCCGCAAGGGACATCCAGACAGTGTCCAAATAGACAGTGTTCCTGCAAAATTCACCGAAAACGGAGTAGATGAAACGGA
ATTTTACCTATCTACAAATCCGGGTGAACCCCTTAAACCGCTTTCCAAAATTGCATCCGGGGGAGAGCTTTCAAGAATCA
TGCTTGCGATGAAAAGCATCTTCTCCAAGCATCAGGGTGTGACGTCGATCATCTTTGATGAGGTTGATACTGGAGTGAGC
GGGAGAGTGGCCCAGGCCATCGCAGAGAAGATCTATAAGGTCTCTGTCGGGTCCCAGGTGCTCTGCATCACTCACCTGCC
TCAGGTAGCTGCAATGGCAGACACGCATCTTTTCATCTCCAAAGAAACGGTTAAAGGACGCACGAAAACAAGTGTTAAGC
CTCTTCTCGAGGAAGAAAAGATAAAAGAAGTCGGCCGGATGATTGCCGGAGTTGAAGTAACGGATTTGACGAAACAGCAT
GCCAAAGAATTGCTTGCTCTTGCAGAAGCTGCAAAGAGCTTCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

68.522

100

0.686

Multiple sequence alignment