Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACK1LH_RS00610 Genome accession   NZ_CP176757
Coordinates   115480..116862 (+) Length   460 a.a.
NCBI ID   WP_411334271.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110480..121862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS00590 (ACK1LH_00590) - 110786..111247 (+) 462 WP_029282894.1 CtsR family transcriptional regulator -
  ACK1LH_RS00595 (ACK1LH_00595) - 111263..111808 (+) 546 WP_029282892.1 UvrB/UvrC motif-containing protein -
  ACK1LH_RS00600 (ACK1LH_00600) - 111810..112901 (+) 1092 WP_029282890.1 protein arginine kinase -
  ACK1LH_RS00605 (ACK1LH_00605) clpC 112898..115348 (+) 2451 WP_029566224.1 ATP-dependent protease ATP-binding subunit ClpC -
  ACK1LH_RS00610 (ACK1LH_00610) radA 115480..116862 (+) 1383 WP_411334271.1 DNA repair protein RadA Machinery gene
  ACK1LH_RS00615 (ACK1LH_00615) disA 116867..117949 (+) 1083 WP_267881661.1 DNA integrity scanning diadenylate cyclase DisA -
  ACK1LH_RS00620 (ACK1LH_00620) - 118145..119245 (+) 1101 WP_029282881.1 PIN/TRAM domain-containing protein -
  ACK1LH_RS00625 (ACK1LH_00625) ispD 119258..119941 (+) 684 WP_411334272.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACK1LH_RS00630 (ACK1LH_00630) ispF 119945..120421 (+) 477 WP_411334273.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49636.26 Da        Isoelectric Point: 7.7281

>NTDB_id=1082764 ACK1LH_RS00610 WP_411334271.1 115480..116862(+) (radA) [Metabacillus indicus strain JKLC.Or24]
MAKTKSKFMCLECGYESPKWMGKCPGCGAWNTMTEEVVKTGTANRRVAFAHSAQGKTANKPSPITNIETSQEPRIKTNLK
EFNRVLGSGIVKGSLVLIGGDPGIGKSTLLLQVSSQLADNGNDVLYISGEESVKQTKMRADRLGVKSEKLLVLAETDMEY
ISMAIDDTNPAFVIVDSIQTVFQSDITSAPGSVSQVRECTAELMRLAKTKGIAIFIVGHVTKEGSIAGPRILEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVLNPSEIFLEERSKGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFKDAPSKATDIIIGEVG
LTGEVRRVSRIEQRVMEAAKLGFRRAIIPEANIGGWTVPHGIEAVGVKNVAEALQITLGG

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1082764 ACK1LH_RS00610 WP_411334271.1 115480..116862(+) (radA) [Metabacillus indicus strain JKLC.Or24]
ATGGCTAAAACAAAATCGAAATTCATGTGCCTTGAGTGCGGATATGAGTCCCCAAAGTGGATGGGGAAATGCCCGGGCTG
CGGAGCATGGAATACGATGACAGAGGAAGTTGTAAAAACAGGAACGGCAAACAGGAGAGTGGCCTTTGCACACTCTGCGC
AGGGAAAGACCGCAAACAAACCTTCACCTATCACAAACATTGAAACGTCTCAGGAACCGCGCATTAAAACCAACCTCAAA
GAATTTAACCGTGTTCTCGGCAGCGGGATCGTAAAGGGTTCCCTTGTCCTGATAGGAGGAGACCCCGGAATTGGAAAATC
AACGCTTTTGCTTCAGGTTTCCTCACAGCTTGCCGATAATGGAAACGATGTTCTCTACATATCGGGAGAGGAGTCGGTCA
AGCAGACGAAAATGAGGGCTGACCGCCTCGGTGTTAAATCTGAGAAACTGCTTGTACTTGCTGAAACCGATATGGAATAT
ATCTCTATGGCAATTGATGATACAAATCCGGCTTTTGTGATTGTCGATTCCATTCAGACGGTGTTTCAGAGTGACATTAC
CTCAGCGCCTGGAAGTGTCTCGCAGGTTAGGGAATGTACGGCAGAACTTATGAGACTTGCAAAAACGAAGGGCATTGCCA
TCTTCATTGTCGGACATGTTACAAAGGAAGGCTCAATTGCCGGTCCGAGAATTCTTGAGCACATGGTTGACACTGTTCTG
TATTTTGAAGGGGAGCGCCACCATACGTACCGGATACTAAGAGCAGTGAAAAACCGTTTTGGGTCCACAAATGAAATGGG
TATTTTTGAAATGAAGGAAAGCGGGCTTGAAGAGGTATTGAATCCGTCTGAGATCTTCCTTGAGGAACGTTCCAAAGGGG
CTGCTGGCTCTACCGTTGTAGCTTCCATGGAAGGGACAAGACCGGTTCTTGTGGAGATTCAGGCGCTGATTTCGCCGACA
AGCTTTGGCAACCCGAGAAGAATGGCAACAGGAATCGATCATAACCGGGTGCCGCTTCTGATGGCTGTGCTTGAAAAGAG
AGTCGGTTTGCTGCTGCAGAATCAGGATGCCTATTTAAAAGTGGCCGGCGGAGTAAAGCTTGATGAGCCTGCGATTGATC
TTGCAGTTGCTGTAAGCATCGCTTCAAGCTTTAAGGATGCGCCTTCAAAAGCAACAGATATTATTATTGGAGAAGTAGGG
CTGACAGGCGAAGTAAGGCGCGTTTCGAGAATTGAGCAGCGCGTCATGGAAGCAGCCAAGCTCGGGTTCAGGCGTGCGAT
CATTCCAGAGGCGAATATAGGCGGTTGGACAGTTCCGCATGGCATAGAGGCAGTGGGTGTGAAAAACGTCGCAGAAGCCC
TGCAAATCACACTGGGAGGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(367-432)

AAA domain (AAA_25)

(67-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

81.739

100

0.817
  radA Streptococcus pneumoniae Rx1

61.099

98.913

0.604
  radA Streptococcus pneumoniae D39

61.099

98.913

0.604
  radA Streptococcus pneumoniae R6

61.099

98.913

0.604
  radA Streptococcus pneumoniae TIGR4

61.099

98.913

0.604
  radA Streptococcus mitis NCTC 12261

61.099

98.913

0.604
  radA Streptococcus mitis SK321

61.099

98.913

0.604

Multiple sequence alignment