Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACE3MZ_RS08755 Genome accession   NZ_CP176756
Coordinates   2020042..2020470 (+) Length   142 a.a.
NCBI ID   WP_411346739.1    Uniprot ID   -
Organism   Paenibacillus sp. WLX1005     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2015042..2025470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE3MZ_RS08730 (ACE3MZ_08730) - 2016072..2016503 (+) 432 WP_411346053.1 SMI1/KNR4 family protein -
  ACE3MZ_RS08735 (ACE3MZ_08735) - 2016526..2017194 (+) 669 WP_411346054.1 SGNH/GDSL hydrolase family protein -
  ACE3MZ_RS08740 (ACE3MZ_08740) - 2017241..2018437 (+) 1197 WP_411346055.1 acyl-CoA dehydrogenase family protein -
  ACE3MZ_RS08745 (ACE3MZ_08745) - 2018494..2018973 (+) 480 WP_411346056.1 hypothetical protein -
  ACE3MZ_RS08750 (ACE3MZ_08750) - 2019192..2019368 (-) 177 WP_411346057.1 YjfB family protein -
  ACE3MZ_RS08755 (ACE3MZ_08755) nucA/comI 2020042..2020470 (+) 429 WP_411346739.1 sporulation protein Machinery gene
  ACE3MZ_RS08760 (ACE3MZ_08760) - 2020584..2021027 (-) 444 WP_411346740.1 VOC family protein -
  ACE3MZ_RS08765 (ACE3MZ_08765) - 2021284..2022228 (+) 945 WP_411346058.1 helix-turn-helix transcriptional regulator -
  ACE3MZ_RS08770 (ACE3MZ_08770) - 2022559..2023761 (-) 1203 WP_411346059.1 MFS transporter -
  ACE3MZ_RS08775 (ACE3MZ_08775) - 2023907..2024506 (-) 600 WP_411346060.1 TetR/AcrR family transcriptional regulator -
  ACE3MZ_RS08780 (ACE3MZ_08780) rsmD 2024683..2025276 (+) 594 WP_411346061.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15517.59 Da        Isoelectric Point: 5.6278

>NTDB_id=1082743 ACE3MZ_RS08755 WP_411346739.1 2020042..2020470(+) (nucA/comI) [Paenibacillus sp. WLX1005]
MKKMVMMVMMLVVFITTPALLQGTNDVHKASAAAAYDYTLNFPSTRYPETADHIRDAIADGHSAICTIDRPGADARRADS
LKGIPTKSGYDRDEWPMAMCLEGGTGADIRYVTPSDNRGAGSWVGNQLDDYPDGTRVKFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1082743 ACE3MZ_RS08755 WP_411346739.1 2020042..2020470(+) (nucA/comI) [Paenibacillus sp. WLX1005]
ATGAAGAAAATGGTAATGATGGTGATGATGCTGGTCGTGTTTATCACAACACCAGCGCTGTTGCAGGGGACGAATGATGT
ACATAAGGCAAGTGCGGCTGCGGCGTATGATTATACGTTGAATTTTCCATCTACGCGTTATCCAGAAACTGCGGATCATA
TCCGCGATGCGATCGCAGATGGACATTCCGCCATTTGCACGATTGACCGTCCGGGTGCCGATGCGCGTCGTGCCGATTCG
TTAAAAGGCATACCGACCAAATCCGGGTATGATCGCGATGAATGGCCAATGGCGATGTGCTTGGAAGGTGGAACAGGCGC
AGATATTCGCTATGTTACGCCTTCAGATAATCGTGGTGCTGGTTCGTGGGTCGGTAATCAGCTGGATGATTATCCAGATG
GTACACGCGTTAAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.217

80.986

0.528

Multiple sequence alignment