Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AACH71_RS10900 Genome accession   NZ_AP029050
Coordinates   2172081..2172530 (+) Length   149 a.a.
NCBI ID   WP_134976099.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2167081..2177530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS10880 (BSB_21140) hxlR 2168291..2168653 (-) 363 WP_014662740.1 transcriptional activator HxlR -
  AACH71_RS10885 (BSB_21150) hxlA 2168886..2169518 (+) 633 WP_136654871.1 3-hexulose-6-phosphate synthase -
  AACH71_RS10890 (BSB_21160) hxlB 2169524..2170081 (+) 558 WP_136654872.1 6-phospho-3-hexuloisomerase -
  AACH71_RS10895 (BSB_21170) tlpC 2170192..2171913 (+) 1722 WP_136654873.1 methyl-accepting chemotaxis protein TlpC -
  AACH71_RS10900 (BSB_21180) nucA/comI 2172081..2172530 (+) 450 WP_134976099.1 DNA-entry nuclease Machinery gene
  AACH71_RS10905 (BSB_21190) nin/comJ 2172557..2172955 (+) 399 WP_014662735.1 DNA-entry nuclease inhibitor Regulator
  AACH71_RS10910 (BSB_21200) bglC 2172992..2174425 (-) 1434 WP_069148927.1 6-phospho-beta-glucosidase -
  AACH71_RS10915 (BSB_21210) - 2174498..2175226 (-) 729 WP_136654874.1 AAA family ATPase -
  AACH71_RS10920 (BSB_21220) - 2175245..2175586 (-) 342 WP_136654875.1 DUF3147 family protein -
  AACH71_RS10925 (BSB_21230) - 2175574..2175996 (-) 423 WP_041521243.1 MarR family transcriptional regulator -
  AACH71_RS10930 (BSB_21240) - 2176123..2176455 (-) 333 WP_014662730.1 YckD family protein -
  AACH71_RS10935 (BSB_21250) - 2176536..2176991 (-) 456 WP_338709348.1 RDD family protein -
  AACH71_RS10940 - 2177011..2177206 (-) 196 Protein_2148 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16374.33 Da        Isoelectric Point: 4.5022

>NTDB_id=108272 AACH71_RS10900 WP_134976099.1 2172081..2172530(+) (nucA/comI) [Bacillus stercoris strain BST19]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIALPSDRYPETAKHIKNAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=108272 AACH71_RS10900 WP_134976099.1 2172081..2172530(+) (nucA/comI) [Bacillus stercoris strain BST19]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGAATGCGATAAATGAGGGGCACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAATCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

95.302

100

0.953

Multiple sequence alignment