Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACDE64_RS08570 Genome accession   NZ_CP176755
Coordinates   1986138..1986566 (+) Length   142 a.a.
NCBI ID   WP_411346739.1    Uniprot ID   -
Organism   Paenibacillus sp. WLX2291     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1981138..1991566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDE64_RS08545 (ACDE64_08545) - 1982168..1982599 (+) 432 WP_411349696.1 SMI1/KNR4 family protein -
  ACDE64_RS08550 (ACDE64_08550) - 1982622..1983290 (+) 669 WP_411349697.1 SGNH/GDSL hydrolase family protein -
  ACDE64_RS08555 (ACDE64_08555) - 1983337..1984533 (+) 1197 WP_411349698.1 acyl-CoA dehydrogenase family protein -
  ACDE64_RS08560 (ACDE64_08560) - 1984590..1985069 (+) 480 WP_411349699.1 hypothetical protein -
  ACDE64_RS08565 (ACDE64_08565) - 1985288..1985464 (-) 177 WP_411346057.1 YjfB family protein -
  ACDE64_RS08570 (ACDE64_08570) nucA/comI 1986138..1986566 (+) 429 WP_411346739.1 sporulation protein Machinery gene
  ACDE64_RS08575 (ACDE64_08575) - 1986680..1987123 (-) 444 WP_411346740.1 VOC family protein -
  ACDE64_RS08580 (ACDE64_08580) - 1987380..1988324 (+) 945 WP_411349700.1 helix-turn-helix transcriptional regulator -
  ACDE64_RS08585 (ACDE64_08585) - 1988655..1989857 (-) 1203 WP_411349701.1 MFS transporter -
  ACDE64_RS08590 (ACDE64_08590) - 1990003..1990602 (-) 600 WP_411349702.1 TetR/AcrR family transcriptional regulator -
  ACDE64_RS08595 (ACDE64_08595) rsmD 1990779..1991372 (+) 594 WP_411349703.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15517.59 Da        Isoelectric Point: 5.6278

>NTDB_id=1082711 ACDE64_RS08570 WP_411346739.1 1986138..1986566(+) (nucA/comI) [Paenibacillus sp. WLX2291]
MKKMVMMVMMLVVFITTPALLQGTNDVHKASAAAAYDYTLNFPSTRYPETADHIRDAIADGHSAICTIDRPGADARRADS
LKGIPTKSGYDRDEWPMAMCLEGGTGADIRYVTPSDNRGAGSWVGNQLDDYPDGTRVKFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1082711 ACDE64_RS08570 WP_411346739.1 1986138..1986566(+) (nucA/comI) [Paenibacillus sp. WLX2291]
ATGAAGAAAATGGTAATGATGGTGATGATGCTGGTCGTGTTTATCACAACACCAGCGCTGTTGCAGGGGACGAATGATGT
ACATAAGGCAAGTGCGGCTGCGGCGTATGATTATACGTTGAATTTTCCATCTACGCGTTATCCAGAAACTGCGGATCATA
TCCGCGATGCGATCGCAGATGGACATTCCGCCATTTGCACGATTGACCGTCCGGGTGCCGACGCGCGTCGTGCCGATTCG
TTAAAAGGCATACCGACCAAATCTGGGTATGATCGCGATGAATGGCCAATGGCGATGTGTTTGGAAGGTGGAACAGGCGC
AGATATTCGCTATGTTACGCCTTCAGATAATCGTGGTGCTGGTTCGTGGGTTGGTAATCAGCTGGATGATTATCCAGATG
GTACACGCGTTAAATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.217

80.986

0.528

Multiple sequence alignment