Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AACH71_RS07130 Genome accession   NZ_AP029050
Coordinates   1390790..1391368 (-) Length   192 a.a.
NCBI ID   WP_014663442.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385790..1396368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS07095 (BSB_13980) lepB 1385794..1386300 (-) 507 WP_014663449.1 signal peptidase I -
  AACH71_RS07100 (BSB_13990) - 1386302..1386925 (-) 624 WP_014663448.1 TVP38/TMEM64 family protein -
  AACH71_RS07105 (BSB_14000) - 1387078..1387440 (+) 363 WP_069839063.1 hypothetical protein -
  AACH71_RS07110 (BSB_14010) - 1387651..1387851 (+) 201 WP_014663446.1 DUF3311 domain-containing protein -
  AACH71_RS07115 (BSB_14020) - 1387848..1389317 (+) 1470 WP_136654711.1 sodium:solute symporter -
  AACH71_RS07120 (BSB_14030) - 1389361..1389630 (-) 270 WP_014663444.1 excalibur calcium-binding domain-containing protein -
  AACH71_RS07125 (BSB_14040) - 1389846..1390745 (+) 900 WP_338709716.1 SDR family oxidoreductase -
  AACH71_RS07130 (BSB_14050) comK 1390790..1391368 (-) 579 WP_014663442.1 competence transcription factor ComK Regulator
  AACH71_RS07135 (BSB_14060) - 1391661..1391894 (+) 234 WP_014663441.1 IDEAL domain-containing protein -
  AACH71_RS07140 (BSB_14070) - 1391921..1392778 (-) 858 WP_014663440.1 SDR family oxidoreductase -
  AACH71_RS07145 (BSB_14080) - 1392890..1394419 (+) 1530 WP_136654713.1 FAD-dependent oxidoreductase -
  AACH71_RS07150 (BSB_14090) hemAT 1394559..1395857 (+) 1299 WP_136654714.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22402.66 Da        Isoelectric Point: 7.7153

>NTDB_id=108261 AACH71_RS07130 WP_014663442.1 1390790..1391368(-) (comK) [Bacillus stercoris strain BST19]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=108261 AACH71_RS07130 WP_014663442.1 1390790..1391368(-) (comK) [Bacillus stercoris strain BST19]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGTGTGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCTCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATTTCCTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment