Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK2V3_RS11530 Genome accession   NZ_CP176709
Coordinates   2405741..2406376 (+) Length   211 a.a.
NCBI ID   WP_003192043.1    Uniprot ID   A0A0W0N0T4
Organism   Pseudomonas paracarnis strain GTVSS-025     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2400741..2411376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2V3_RS11515 (ACK2V3_11515) - 2401394..2402752 (+) 1359 WP_032902857.1 sensor histidine kinase -
  ACK2V3_RS11520 (ACK2V3_11520) - 2402756..2403271 (-) 516 WP_003192045.1 DUF2062 domain-containing protein -
  ACK2V3_RS11525 (ACK2V3_11525) comA 2403407..2405632 (+) 2226 WP_256670321.1 ComEC/Rec2 family competence protein Machinery gene
  ACK2V3_RS11530 (ACK2V3_11530) exbB 2405741..2406376 (+) 636 WP_003192043.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK2V3_RS11535 (ACK2V3_11535) - 2406373..2406801 (+) 429 WP_153649780.1 ExbD/TolR family protein -
  ACK2V3_RS11540 (ACK2V3_11540) lpxK 2406801..2407811 (+) 1011 WP_032902859.1 tetraacyldisaccharide 4'-kinase -
  ACK2V3_RS11545 (ACK2V3_11545) - 2407836..2408021 (+) 186 WP_003174668.1 Trm112 family protein -
  ACK2V3_RS11550 (ACK2V3_11550) kdsB 2408018..2408782 (+) 765 WP_032902860.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK2V3_RS11555 (ACK2V3_11555) - 2408782..2409246 (+) 465 WP_014718874.1 low molecular weight protein-tyrosine-phosphatase -
  ACK2V3_RS11560 (ACK2V3_11560) murB 2409243..2410262 (+) 1020 WP_032902861.1 UDP-N-acetylmuramate dehydrogenase -
  ACK2V3_RS11565 (ACK2V3_11565) - 2410332..2411003 (-) 672 WP_003192030.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22910.04 Da        Isoelectric Point: 7.3615

>NTDB_id=1082521 ACK2V3_RS11530 WP_003192043.1 2405741..2406376(+) (exbB) [Pseudomonas paracarnis strain GTVSS-025]
MWELVKSGGWMMLPIILSSIVALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1082521 ACK2V3_RS11530 WP_003192043.1 2405741..2406376(+) (exbB) [Pseudomonas paracarnis strain GTVSS-025]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGTCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACTTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAAAAGCTCAAAGAGCTGCGTGCCAATTCGCCACTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCGGCCGCCCGGGTTATTCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACTATCGCCGCCATGGCGCCGTTGCTCGGTTTGCTCGGCACGGTCCTGGGCATGATCGATATCTTCA
GCGCGTTCACGGGCTCGGGCATGACCACCAACGCGTCGGTATTGGCCGGGGGCATTTCCAAGGCCCTGATCACTACTGCT
GCGGGCTTGATGGTGGGTATCCCTTCGGTGTTTTTCCACCGTTTCCTGCAGCGGCGCATTGATGAGCTGGTGGTCGGTAT
GGAACAGGAAGCCATCAAGCTGGTAGAAGTGGTGCAGGGCGACCGTGATGTAGACCTGGTCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N0T4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858

Multiple sequence alignment