Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   ACK2VI_RS08725 Genome accession   NZ_CP176704
Coordinates   1858240..1858836 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain GTVSS-027     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 1853240..1863836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VI_RS08705 (ACK2VI_08705) - 1853433..1855190 (-) 1758 WP_048265355.1 Lon protease family protein -
  ACK2VI_RS08710 (ACK2VI_08710) matP 1855376..1855828 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACK2VI_RS08715 (ACK2VI_08715) ompA 1855960..1857030 (-) 1071 WP_002898408.1 porin OmpA -
  ACK2VI_RS08720 (ACK2VI_08720) sulA 1857383..1857892 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACK2VI_RS08725 (ACK2VI_08725) sxy/tfoX 1858240..1858836 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  ACK2VI_RS08730 (ACK2VI_08730) yccS 1858850..1860985 (-) 2136 WP_002898422.1 YccS family putative transporter -
  ACK2VI_RS08735 (ACK2VI_08735) - 1861003..1861449 (-) 447 WP_002898425.1 YccF domain-containing protein -
  ACK2VI_RS08740 (ACK2VI_08740) helD 1861574..1863628 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1082490 ACK2VI_RS08725 WP_004179217.1 1858240..1858836(+) (sxy/tfoX) [Klebsiella pneumoniae strain GTVSS-027]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1082490 ACK2VI_RS08725 WP_004179217.1 1858240..1858836(+) (sxy/tfoX) [Klebsiella pneumoniae strain GTVSS-027]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51


Multiple sequence alignment