Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AACH71_RS05235 Genome accession   NZ_AP029050
Coordinates   1044868..1045332 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus stercoris strain BST19     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039868..1050332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS05215 (BSB_10270) fadH 1041055..1041819 (-) 765 WP_014663789.1 2,4-dienoyl-CoA reductase -
  AACH71_RS05220 (BSB_10280) - 1041963..1042823 (+) 861 WP_136654531.1 metallophosphoesterase -
  AACH71_RS05225 (BSB_10290) - 1042881..1043375 (+) 495 WP_136654774.1 L,D-transpeptidase family protein -
  AACH71_RS05230 (BSB_10300) - 1043451..1044743 (+) 1293 WP_014663786.1 MFS transporter -
  AACH71_RS05235 (BSB_10310) kre 1044868..1045332 (+) 465 WP_003232406.1 YkyB family protein Regulator
  AACH71_RS05240 (BSB_10320) cheV 1045376..1046287 (-) 912 WP_014663784.1 chemotaxis protein CheV -
  AACH71_RS05245 (BSB_10330) - 1046492..1046653 (+) 162 WP_003245246.1 hypothetical protein -
  AACH71_RS05250 (BSB_10340) - 1046855..1048036 (+) 1182 WP_069838855.1 aminotransferase A -
  AACH71_RS05255 (BSB_10350) kinA 1048047..1049867 (-) 1821 WP_014663782.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=108249 AACH71_RS05235 WP_003232406.1 1044868..1045332(+) (kre) [Bacillus stercoris strain BST19]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=108249 AACH71_RS05235 WP_003232406.1 1044868..1045332(+) (kre) [Bacillus stercoris strain BST19]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGTGCTTTGCAAAAGCTCGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCAAAACACCTGTTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CTAATCGCCAGCAGCCAGCTTATCACAAACCTGTCTTTAAAAAGCTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment