Detailed information NTG0108249

Bioinformatically predicted

Overview

• Name: amiE
• Type: Regulator
• Locus tag: FH07_RS23725
• Genome accession: NZ_CP008697
• Coordinates: 4793116..4794099 (-)
• Length: 327 a.a.
• NCBI ID: WP_060684508.1
• Uniprot ID: -
• Organism: Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 4788116..4799099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FH07_RS23695 (FH07_23765)	bcsF	4788278..4788469 (+)	192	WP_000988308.1	cellulose biosynthesis protein BcsF	-
FH07_RS23700 (FH07_23770)	bcsG	4788466..4790145 (+)	1680	WP_022646241.1	cellulose biosynthesis protein BcsG	-
FH07_RS28035	ldrD	4790231..4790338 (-)	108	WP_000170736.1	type I toxin-antitoxin system toxin Ldr family protein	-
FH07_RS23715 (FH07_23780)	yhjV	4790814..4792085 (+)	1272	WP_022646242.1	aromatic amino acid transport family protein	-
FH07_RS23720 (FH07_23785)	dppF	4792115..4793119 (-)	1005	WP_000107033.1	dipeptide ABC transporter ATP-binding subunit DppF	-
FH07_RS23725 (FH07_23790)	amiE	4793116..4794099 (-)	984	WP_060684508.1	dipeptide ABC transporter ATP-binding protein	Regulator
FH07_RS23730 (FH07_23795)	dppC	4794110..4795012 (-)	903	WP_000084677.1	dipeptide ABC transporter permease DppC	-
FH07_RS23735 (FH07_23800)	dppB	4795022..4796041 (-)	1020	WP_000938855.1	dipeptide ABC transporter permease DppB	-
FH07_RS23745 (FH07_23805)	dppA	4796192..4797799 (-)	1608	WP_001222871.1	dipeptide ABC transporter substrate-binding protein DppA	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 35766.25 Da
• Isoelectric Point: 6.5813

>NTDB_id=108249 FH07_RS23725 WP_060684508.1 4793116..4794099(-) (amiE) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE
KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
RVMIAIAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHA
IFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDKCRAEEPALNVLADGRQSKCHYPLD
DAGRPTL

Nucleotide

• Length: 984 bp

>NTDB_id=108249 FH07_RS23725 WP_060684508.1 4793116..4794099(-) (amiE) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
ATGGCGTTATTAAATGTAGATAAATTATCGGTGCATTTCGGCGACGAAAGCGCACCGTTCCGCGCCGTAGACCGCATCAG
CTACAGCGTAAAACAGGGCGAAGTGGTCGGGATTGTGGGTGAGTCCGGCTCTGGTAAATCGGTCAGTTCGCTGGCGATTA
TGGGGCTGATTGATTATCCGGGCCGCGTAATGGCGGAAAAGCTGGAGTTTAACGGTCAGGATTTACAGCGTATCTCAGAA
AAAGAGCGCCGCAACCTGGTGGGTGCCGAAGTGGCGATGATCTTCCAGGACCCGATGACCAGCCTTAACCCGTGCTACAC
CGTGGGTTTCCAGATTATGGAAGCGATTAAGGTGCATCAGGGCGGCAACAAAAGTACCCGCCGTCAGCGGGCGATTGACC
TGCTGAATCAGGTCGGTATTCCCGATCCGGCATCGCGTCTGGATGTTTACCCGCATCAGCTTTCCGGCGGCATGAGCCAG
CGCGTGATGATCGCCATAGCGATTGCCTGTCGGCCAAAACTGCTGATTGCCGATGAACCGACCACCGCGCTGGACGTGAC
CATTCAGGCGCAAATCATCGAACTGCTGCTGGAGCTACAGCAGAAAGAGAACATGGCGCTGGTGTTAATTACCCATGACC
TGGCGCTGGTGGCGGAAGCGGCACATAAAATTATCGTGATGTATGCAGGCCAGGTAGTAGAAACGGGCGATGCGCACGCC
ATCTTCCATGCGCCGCGTCACCCGTATACTCAGGCATTGCTGCGTGCGCTGCCGGAATTTGCTCAGGATAAAGAACGTCT
GGCGTCGTTGCCAGGTGTTGTTCCCGGCAAGTATGACCGTCCGAACGGCTGCCTGCTTAACCCGCGCTGCCCCTACGCCA
CTGACAAATGCCGCGCTGAAGAACCGGCGCTGAATGTGCTCGCTGACGGGCGTCAGTCCAAATGCCACTACCCACTTGAT
GATGCCGGGAGGCCGACACTATGA

Domains

Predicted by InterProScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-297)

• ABC transporter (ABC_tran) (24-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiE	Streptococcus salivarius strain HSISS4	43.614	98.165	0.428
amiE	Streptococcus thermophilus LMG 18311	43.302	98.165	0.425
amiE	Streptococcus thermophilus LMD-9	43.302	98.165	0.425
oppD	Streptococcus mutans UA159	41.693	97.554	0.407