Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AACH71_RS05015 Genome accession   NZ_AP029050
Coordinates   1005094..1005372 (-) Length   92 a.a.
NCBI ID   WP_014663823.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1000094..1010372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS04995 (BSB_09830) ade 1000159..1001892 (-) 1734 WP_136654517.1 adenine deaminase -
  AACH71_RS05000 (BSB_09840) ktrC 1002047..1002712 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  AACH71_RS05005 (BSB_09850) - 1002744..1003601 (-) 858 WP_136654518.1 gamma-glutamylcyclotransferase -
  AACH71_RS05010 (BSB_09860) kinC 1003617..1004903 (-) 1287 WP_014663824.1 two-component sensor histidine kinase KinC -
  AACH71_RS05015 (BSB_09870) abrB 1005094..1005372 (-) 279 WP_014663823.1 transcriptional regulator AbhA Regulator
  AACH71_RS05020 (BSB_09880) mreBH 1005655..1006662 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  AACH71_RS05025 (BSB_09890) - 1006763..1006897 (+) 135 WP_003238865.1 protein YkpC -
  AACH71_RS05030 (BSB_09900) - 1007008..1008240 (+) 1233 WP_040083259.1 aminopeptidase -
  AACH71_RS05035 (BSB_09910) - 1008273..1009184 (-) 912 WP_136654519.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=108247 AACH71_RS05015 WP_014663823.1 1005094..1005372(-) (abrB) [Bacillus stercoris strain BST19]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKDYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=108247 AACH71_RS05015 WP_014663823.1 1005094..1005372(-) (abrB) [Bacillus stercoris strain BST19]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGATTACGGCAACGGCAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment