Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FH07_RS22620 Genome accession   NZ_CP008697
Coordinates   4556614..4557081 (+) Length   155 a.a.
NCBI ID   WP_022646190.1    Uniprot ID   -
Organism   Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4551614..4562081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH07_RS22570 (FH07_22700) rplP 4551724..4552134 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  FH07_RS22575 (FH07_22705) rpsC 4552147..4552848 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  FH07_RS22580 (FH07_22710) rplV 4552866..4553198 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  FH07_RS22585 (FH07_22715) rpsS 4553213..4553491 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  FH07_RS22590 (FH07_22720) rplB 4553508..4554329 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  FH07_RS22595 (FH07_22725) rplW 4554347..4554649 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  FH07_RS22600 (FH07_22730) rplD 4554646..4555251 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  FH07_RS22605 (FH07_22735) rplC 4555262..4555891 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  FH07_RS22610 (FH07_22740) rpsJ 4555924..4556235 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  FH07_RS22620 (FH07_22745) pilD 4556614..4557081 (+) 468 WP_022646190.1 A24 family peptidase Machinery gene
  FH07_RS22625 (FH07_22750) bfr 4557078..4557554 (-) 477 WP_000675515.1 bacterioferritin -
  FH07_RS22630 (FH07_22755) bfd 4557627..4557821 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  FH07_RS28885 tuf 4558004..4558978 (-) 975 Protein_4349 elongation factor Tu -
  FH07_RS28890 tuf 4558979..4560157 (-) 1179 Protein_4350 elongation factor Tu -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17064.20 Da        Isoelectric Point: 8.1255

>NTDB_id=108244 FH07_RS22620 WP_022646190.1 4556614..4557081(+) (pilD) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLATAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=108244 FH07_RS22620 WP_022646190.1 4556614..4557081(+) (pilD) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATTCTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGACTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368

Multiple sequence alignment