Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AACH71_RS03780 Genome accession   NZ_AP029050
Coordinates   758595..759845 (-) Length   416 a.a.
NCBI ID   WP_069839433.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 753595..764845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS03765 (BSB_07380) rny 754194..755756 (-) 1563 WP_003221010.1 ribonuclease Y -
  AACH71_RS03770 (BSB_07390) - 756033..757208 (-) 1176 WP_014664022.1 serine hydrolase domain-containing protein -
  AACH71_RS03775 (BSB_07400) recA 757376..758422 (-) 1047 WP_003245789.1 recombinase RecA Machinery gene
  AACH71_RS03780 (BSB_07410) cinA 758595..759845 (-) 1251 WP_069839433.1 competence/damage-inducible protein A Machinery gene
  AACH71_RS03785 (BSB_07420) pgsA 759863..760444 (-) 582 WP_136654467.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AACH71_RS03790 (BSB_07430) rodZ 760494..761360 (-) 867 WP_211095886.1 RodZ family helix-turn-helix domain-containing protein -
  AACH71_RS03795 (BSB_07440) - 761427..762218 (-) 792 WP_040083145.1 YmfK family protein -
  AACH71_RS03800 (BSB_07450) - 762348..762605 (-) 258 WP_003245199.1 DUF3243 domain-containing protein -
  AACH71_RS03805 (BSB_07460) efpI 762686..763414 (-) 729 WP_041521338.1 EF-P-5 aminopentanone reductase -
  AACH71_RS03810 (BSB_07470) - 763469..764755 (-) 1287 WP_040083147.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45467.84 Da        Isoelectric Point: 5.2539

>NTDB_id=108244 AACH71_RS03780 WP_069839433.1 758595..759845(-) (cinA) [Bacillus stercoris strain BST19]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLIEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECAAELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=108244 AACH71_RS03780 WP_069839433.1 758595..759845(-) (cinA) [Bacillus stercoris strain BST19]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCCGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGACAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCGGACTTCATTATTTTTTCAGGAGGTCTTGGACCCACAAAGGATGACCTG
ACGAAAGAAACGATTGCAAATACGCTGGGGCGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAGCGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTGCTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTCATAGAACATGAATCGCGCTTCTATATGCTTCTTCCTGGGCCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTCAAAAAGATGGGTTCAAATGAAAAAATTGTGTCCACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCTGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGCTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGGTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGCGGGCTTTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAACATTATTTGCCGGCGGTGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTGAAGAAGGACACATTAGATCGTTTTGGAGCGGTCAGCAAGGAATGCGCAGCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGTATTTCCGCAAATGGGAAAGAAGAGGTTCATGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGCGCCAAATATGGCTGCCATTTAATCTTAAAGCTTTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.317

100

0.983
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377

Multiple sequence alignment