Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACK2VN_RS21000 Genome accession   NZ_CP176690
Coordinates   3980746..3981069 (+) Length   107 a.a.
NCBI ID   WP_000578882.1    Uniprot ID   -
Organism   Bacillus paranthracis strain GTVSS-022     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3975746..3986069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VN_RS20985 (ACK2VN_20985) - 3976264..3977631 (-) 1368 WP_000116810.1 aldehyde dehydrogenase -
  ACK2VN_RS20990 (ACK2VN_20990) inhA1 3977803..3980190 (-) 2388 WP_001035931.1 M6 family metalloprotease immune inhibitor InhA1 -
  ACK2VN_RS20995 (ACK2VN_20995) - 3980532..3980666 (+) 135 WP_000276223.1 anti-repressor SinI family protein -
  ACK2VN_RS21000 (ACK2VN_21000) sinR 3980746..3981069 (+) 324 WP_000578882.1 helix-turn-helix domain-containing protein Regulator
  ACK2VN_RS21005 (ACK2VN_21005) calY 3981144..3981737 (-) 594 WP_000053739.1 biofilm matrix protein CalY -
  ACK2VN_RS21010 (ACK2VN_21010) - 3982164..3982904 (-) 741 WP_000917718.1 DUF4047 domain-containing protein -
  ACK2VN_RS21015 (ACK2VN_21015) - 3983062..3983652 (-) 591 WP_000172846.1 TasA family protein -
  ACK2VN_RS21020 (ACK2VN_21020) sipW 3983713..3984282 (-) 570 WP_000767807.1 signal peptidase I SipW -
  ACK2VN_RS21025 (ACK2VN_21025) - 3984477..3985763 (-) 1287 WP_000247020.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12359.19 Da        Isoelectric Point: 8.5614

>NTDB_id=1082383 ACK2VN_RS21000 WP_000578882.1 3980746..3981069(+) (sinR) [Bacillus paranthracis strain GTVSS-022]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1082383 ACK2VN_RS21000 WP_000578882.1 3980746..3981069(+) (sinR) [Bacillus paranthracis strain GTVSS-022]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment