Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AACH71_RS00235 Genome accession   NZ_AP029050
Coordinates   39574..40341 (+) Length   255 a.a.
NCBI ID   WP_014664644.1    Uniprot ID   -
Organism   Bacillus stercoris strain BST19     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 34574..45341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH71_RS00205 (BSB_00390) pgpH 34870..37005 (+) 2136 WP_014664649.1 cyclic-di-AMP phosphodiesterase PgpH -
  AACH71_RS00210 (BSB_00400) ybeY 37006..37479 (+) 474 WP_014664648.1 rRNA maturation RNase YbeY -
  AACH71_RS00215 (BSB_00410) - 37460..37831 (+) 372 WP_069149890.1 diacylglycerol kinase family protein -
  AACH71_RS00220 (BSB_00420) - 37950..38360 (+) 411 WP_014664646.1 cytidine deaminase -
  AACH71_RS00225 (BSB_00430) era 38341..39246 (+) 906 WP_136654226.1 GTPase Era -
  AACH71_RS00230 (BSB_00440) - 39394..39537 (+) 144 WP_003230053.1 YqzL family protein -
  AACH71_RS00235 (BSB_00450) recO 39574..40341 (+) 768 WP_014664644.1 DNA repair protein RecO Machinery gene
  AACH71_RS00240 (BSB_00460) glyQ 40638..41525 (+) 888 WP_040083765.1 glycine--tRNA ligase subunit alpha -
  AACH71_RS00245 (BSB_00470) glyS 41518..43557 (+) 2040 WP_136654225.1 glycine--tRNA ligase subunit beta -
  AACH71_RS00250 (BSB_00480) ccpN 43690..44328 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  AACH71_RS00255 (BSB_00490) - 44354..45166 (+) 813 WP_014664641.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29370.06 Da        Isoelectric Point: 8.3088

>NTDB_id=108229 AACH71_RS00235 WP_014664644.1 39574..40341(+) (recO) [Bacillus stercoris strain BST19]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEERKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=108229 AACH71_RS00235 WP_014664644.1 39574..40341(+) (recO) [Bacillus stercoris strain BST19]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTTTTAATGCAAAAAACATCAGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGCGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCCTATGCTGCATATATTGCTGAATTAGTCGACAGAGGCACAGAGGAAAGAAAGCC
AAATCCTTATTTATTTGAATTTATATTAGAATCACTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACTTTTCACTTTTCTGTCCGTGATAATGGTTTTATATGCCATCGCTGTTTTGAAAAAGATCCTTACAGGATTCCGATTAA
ACCGCAAACAGCAAGGCTGTTGAGACTCTTTTATTACTTCGATCTGTCGAGGCTGGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTGTATTACGAAGAATATTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment