Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FH07_RS18405 Genome accession   NZ_CP008697
Coordinates   3728717..3729232 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3723717..3734232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH07_RS18380 (FH07_18595) ygaZ 3724117..3724854 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  FH07_RS18385 (FH07_18600) ygaH 3724844..3725179 (+) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  FH07_RS18390 (FH07_18605) emrR 3725270..3725800 (+) 531 WP_060684476.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FH07_RS18395 (FH07_18610) emrA 3725926..3727098 (+) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FH07_RS18400 (FH07_18615) emrB 3727115..3728653 (+) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  FH07_RS18405 (FH07_18620) luxS 3728717..3729232 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  FH07_RS18410 (FH07_18625) gshA 3729382..3730938 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  FH07_RS18415 (FH07_18630) yqaA 3731011..3731439 (-) 429 WP_001287454.1 YqaA family protein -
  FH07_RS18420 (FH07_18635) yqaB 3731436..3732002 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FH07_RS18435 (FH07_18650) csrA 3732770..3732955 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=108227 FH07_RS18405 WP_001130211.1 3728717..3729232(-) (luxS) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=108227 FH07_RS18405 WP_001130211.1 3728717..3729232(-) (luxS) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment