Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK2VX_RS15015 Genome accession   NZ_CP176663
Coordinates   2884145..2884774 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Shigella sonnei strain GTVSS-016     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879145..2889774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VX_RS15000 (ACK2VX_15000) helD 2879387..2881441 (-) 2055 WP_000420537.1 DNA helicase IV -
  ACK2VX_RS15005 (ACK2VX_15005) - 2881564..2882010 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACK2VX_RS15010 (ACK2VX_15010) yccS 2882020..2884182 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACK2VX_RS15015 (ACK2VX_15015) sxy/tfoX 2884145..2884774 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACK2VX_RS15020 (ACK2VX_15020) sulA 2884993..2885502 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACK2VX_RS15025 (ACK2VX_15025) ompA 2885857..2886897 (+) 1041 WP_000750416.1 porin OmpA -
  ACK2VX_RS15030 (ACK2VX_15030) matP 2886973..2887425 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACK2VX_RS15035 (ACK2VX_15035) - 2887611..2889371 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1082143 ACK2VX_RS15015 WP_000839153.1 2884145..2884774(-) (sxy/tfoX) [Shigella sonnei strain GTVSS-016]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1082143 ACK2VX_RS15015 WP_000839153.1 2884145..2884774(-) (sxy/tfoX) [Shigella sonnei strain GTVSS-016]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment