Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK2VK_RS16605 Genome accession   NZ_CP176650
Coordinates   3382099..3382704 (-) Length   201 a.a.
NCBI ID   WP_023247034.1    Uniprot ID   A0A8F0CF37
Organism   Salmonella enterica subsp. enterica strain GTVSS-030     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3377099..3387704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VK_RS16590 (ACK2VK_16590) helD 3377316..3379370 (-) 2055 WP_079796449.1 DNA helicase IV -
  ACK2VK_RS16595 (ACK2VK_16595) - 3379494..3379940 (+) 447 WP_001261216.1 YccF domain-containing protein -
  ACK2VK_RS16600 (ACK2VK_16600) yccS 3379959..3382112 (+) 2154 WP_023247033.1 YccS family putative transporter -
  ACK2VK_RS16605 (ACK2VK_16605) sxy/tfoX 3382099..3382704 (-) 606 WP_023247034.1 TfoX/Sxy family DNA transformation protein Regulator
  ACK2VK_RS16610 (ACK2VK_16610) sulA 3382921..3383430 (+) 510 WP_023247035.1 SOS-induced cell division inhibitor SulA -
  ACK2VK_RS16615 (ACK2VK_16615) ompA 3383798..3384850 (+) 1053 WP_053530176.1 porin OmpA -
  ACK2VK_RS16620 (ACK2VK_16620) matP 3384922..3385374 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ACK2VK_RS16625 (ACK2VK_16625) - 3385560..3387320 (+) 1761 WP_053509640.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23157.89 Da        Isoelectric Point: 9.0103

>NTDB_id=1081961 ACK2VK_RS16605 WP_023247034.1 3382099..3382704(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain GTVSS-030]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEQSVPYCVKHPPVWLTFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRVLGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1081961 ACK2VK_RS16605 WP_023247034.1 3382099..3382704(-) (sxy/tfoX) [Salmonella enterica subsp. enterica strain GTVSS-030]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTCTGGGGACGATCCAGTATCGATCCTT
ATTCGGCAGCTATAGTCTGACCGTGGAAGATACCGTCTTTGCGATGGTGGCTAACGGCGAGCTTTATCTCCGCGCCTGTG
AGCAAAGCGTACCCTATTGTGTGAAGCATCCTCCCGTCTGGCTCACATTTATGAAGTGTGGACGCCCTGTTATGCTCAAC
TATTATCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAACTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGGCTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAGAATATGTTACGCGTACTGGGTGCAAAAATGTGCTGGCTAAGGTTGCGACAAAGTAAT
CCTTTGCTGACGGTAAAAGTTCTGTATGCGTTAGAAGGCGCAATTGTTGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGATTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

76.884

99.005

0.761

Multiple sequence alignment