Detailed information NTG1081923

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACK2V4_RS12200
• Genome accession: NZ_CP176646
• Coordinates: 2645179..2646168 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain GTVSS-031
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2640179..2651168

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2V4_RS12185 (ACK2V4_12185)	recA	2640727..2641770 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
ACK2V4_RS12190 (ACK2V4_12190)	pncC	2641971..2642453 (-)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
ACK2V4_RS12195 (ACK2V4_12195)	mutS	2642538..2645099 (+)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
ACK2V4_RS12200 (ACK2V4_12200)	rpoS	2645179..2646168 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
ACK2V4_RS12205 (ACK2V4_12205)	-	2646249..2647172 (-)	924	WP_062854437.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACK2V4_RS12210 (ACK2V4_12210)	-	2647187..2647813 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACK2V4_RS12215 (ACK2V4_12215)	surE	2647813..2648589 (-)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
ACK2V4_RS12220 (ACK2V4_12220)	truD	2648589..2649632 (-)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
ACK2V4_RS12225 (ACK2V4_12225)	ispF	2649679..2650155 (-)	477	WP_062854436.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACK2V4_RS12230 (ACK2V4_12230)	ispD	2650173..2650877 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACK2V4_RS12235 (ACK2V4_12235)	ftsB	2650879..2651160 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=1081923 ACK2V4_RS12200 WP_005478537.1 2645179..2646168(-) (rpoS) [Vibrio parahaemolyticus strain GTVSS-031]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=1081923 ACK2V4_RS12200 WP_005478537.1 2645179..2646168(-) (rpoS) [Vibrio parahaemolyticus strain GTVSS-031]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAGGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851