Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACK2I5_RS09170 Genome accession   NZ_CP176645
Coordinates   1854625..1855254 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain SFAD3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1849625..1860254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I5_RS09155 helD 1849867..1851921 (-) 2055 WP_001443200.1 DNA helicase IV -
  ACK2I5_RS09160 yccF 1852044..1852490 (+) 447 WP_001261236.1 YccF domain-containing protein -
  ACK2I5_RS09165 yccS 1852500..1854662 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ACK2I5_RS09170 sxy/tfoX 1854625..1855254 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACK2I5_RS09175 sulA 1855473..1855982 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  ACK2I5_RS09180 ompA 1856338..1857390 (+) 1053 WP_001528868.1 porin OmpA -
  ACK2I5_RS09185 matP 1857469..1857921 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  ACK2I5_RS09190 ycbZ 1858107..1859867 (+) 1761 WP_000156504.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=1081880 ACK2I5_RS09170 WP_000839136.1 1854625..1855254(-) (sxy/tfoX) [Escherichia coli strain SFAD3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1081880 ACK2I5_RS09170 WP_000839136.1 1854625..1855254(-) (sxy/tfoX) [Escherichia coli strain SFAD3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment