Detailed information NTG1081834

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACK2JL_RS12355
• Genome accession: NZ_CP176641
• Coordinates: 2976916..2978283 (+)
• Length: 455 a.a.
• NCBI ID: WP_005834974.1
• Uniprot ID: A0A078S0N1
• Organism: Bacteroides uniformis strain SFAD16
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2971916..2983283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2JL_RS12340	thrA	2972323..2974755 (-)	2433	WP_411331694.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-
ACK2JL_RS12345	-	2975204..2976241 (+)	1038	WP_005834979.1	asparaginase	-
ACK2JL_RS12350	-	2976252..2976794 (-)	543	WP_005834976.1	beta-class carbonic anhydrase	-
ACK2JL_RS12355	radA	2976916..2978283 (+)	1368	WP_005834974.1	DNA repair protein RadA	Machinery gene
ACK2JL_RS12360	-	2978289..2979911 (+)	1623	WP_195588032.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50119.04 Da
• Isoelectric Point: 7.1118

>NTDB_id=1081834 ACK2JL_RS12355 WP_005834974.1 2976916..2978283(+) (radA) [Bacteroides uniformis strain SFAD16]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGMWNTYVEEVVRKEVVNKRPVSGIETAKAKPITLHEIVADDEPRIDLHDAELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIPEKRILYVSGEESTRQLKLRADRLTSASSDCLIVCETSLEQIYVHI
KNIRPDIVIIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGIAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISSILSSNMDTAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGLNTKKIKMELIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=1081834 ACK2JL_RS12355 WP_005834974.1 2976916..2978283(+) (radA) [Bacteroides uniformis strain SFAD16]
ATGGCTAAAGAGAAGACGGTTTATGTATGCAGCAACTGCGGACAAGACTCTCCCAAATGGGTAGGCAAGTGTCCGTCGTG
CGGAATGTGGAACACGTATGTGGAAGAGGTGGTACGGAAAGAAGTGGTGAACAAGCGTCCCGTATCGGGCATAGAGACCG
CCAAAGCCAAACCCATAACCCTCCATGAAATTGTAGCCGATGACGAACCGCGCATCGACCTCCATGATGCCGAACTGAAC
CGGGTACTAGGTGGTGGTCTTGTACAAGGATCTCTTGTTTTGATTGGCGGCGAACCGGGCATCGGGAAATCCACCCTGGT
GCTACAAACCGTACTCCGTATACCGGAGAAACGTATCCTCTACGTCTCCGGCGAAGAAAGTACCCGCCAATTGAAACTGC
GTGCCGACCGCTTGACAAGTGCTTCCAGTGATTGCCTCATCGTATGCGAAACTTCCCTGGAACAGATTTACGTCCATATC
AAGAACATCCGCCCGGACATCGTCATCATCGACTCCATACAGACGATTTCTACCGAAACCCTTGAATCGTCGCCGGGAAG
CATCGCCCAGGTACGGGAATGTTCCGCCTCCATCCTGCGCTTTGCCAAGGAAACGCATACGGCGGTTATCCTCATCGGGC
ATATTAATAAGGAAGGAAGCATAGCCGGCCCCAAGGTACTGGAACATATCGTGGATACCGTACTCCAGTTCGAGGGCGAC
CAGCACTATATGTACCGCATCCTGCGTAGCATCAAGAACCGCTTCGGAAGCACTGCCGAACTGGGTATTTACGAAATGCG
GCAAGATGGATTACGGCAGGTGAGCAACCCATCCGAACTACTGCTGAGCCAGGACCATGAAGGTATGAGCGGCATAGCCA
TCGCCTCCGCGATAGAAGGCATCAGACCGTTCCTCATCGAAACGCAGGCATTGGTCAGCAGTGCCGTATATGGTAACCCA
CAACGCTCTGCCACAGGGTTCGACATCCGCCGCATGAATATGCTGCTGGCCGTATTGGAAAAACGTGTAGGCTTCAAACT
GGCACAGAAAGATGTATTTCTCAATATTGCCGGTGGATTGAAAGTGAACGACCCGGCAATAGACCTTGCCGTCATCAGCT
CTATCCTCTCCAGCAACATGGACACGGCCATAGAGCCGGAGGTGTGCATGGCGGGAGAAATAGGTCTGTCAGGTGAAATC
CGCCCAGTGAACCGCATAGAGCAGCGCATCGGAGAAGCAGAGAAACTTGGATTCAAGCGATTCATACTTCCCAAGTATAA
TATGCAAGGACTGAACACGAAGAAGATTAAAATGGAATTGATACCGGTACGGAAGGTGGAAGAAGCATTCCGTGCCCTAT
TCGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (72-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

3D structure

• AlphaFold DB: A0A078S0N1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.763	100	0.512
radA	Streptococcus mitis SK321	47.912	100	0.479
radA	Streptococcus mitis NCTC 12261	47.912	100	0.479
radA	Streptococcus pneumoniae Rx1	47.912	100	0.479
radA	Streptococcus pneumoniae D39	47.912	100	0.479
radA	Streptococcus pneumoniae R6	47.912	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.479