Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACK2I0_RS11195 Genome accession   NZ_CP176635
Coordinates   2421396..2423246 (-) Length   616 a.a.
NCBI ID   WP_028528126.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain SFAD33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2416396..2428246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I0_RS11175 - 2416599..2418383 (-) 1785 WP_411335559.1 aminopeptidase P family protein -
  ACK2I0_RS11180 - 2418473..2418925 (+) 453 WP_411335560.1 YjbQ family protein -
  ACK2I0_RS11185 - 2418932..2420521 (-) 1590 WP_411335561.1 putative ABC transporter permease subunit -
  ACK2I0_RS11190 - 2420502..2421227 (-) 726 WP_411335562.1 ABC transporter ATP-binding protein -
  ACK2I0_RS11195 rcrQ 2421396..2423246 (-) 1851 WP_028528126.1 ABC transporter ATP-binding protein Regulator
  ACK2I0_RS11200 - 2423246..2425396 (-) 2151 WP_411335563.1 ABC transporter ATP-binding protein -
  ACK2I0_RS11205 - 2425393..2425857 (-) 465 WP_049898077.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68470.10 Da        Isoelectric Point: 6.5647

>NTDB_id=1081775 ACK2I0_RS11195 WP_028528126.1 2421396..2423246(-) (rcrQ) [Ruminococcus gauvreauii strain SFAD33]
MSETHERPQRPGRMHGPGRGMVPGEKAQDFKGTIRKLLAYMGRYKFALIGVFIFAVGGTAFNIVGPKILGKATTEIFNGL
VGKISGSGGIDFEKIGRILLILIALYLISALLTFIQGFIMTGISQKLCYRFREEISQKINRMPMKYFESRTVGEVLSRIT
NDVDTLGQSLNQSVTQLITSVTMIIGILIMMLSISPLMTVIALVILPVSLGLIAVVVKFSQKYFVAQQKYLGKINGQVEE
VYSGHTIVQAFNKEDEMEHEFDETNDVLFQSAWKSQFLSGMMQPIMNFVGNLGYVAVAVVGAFLTVKNMIEVGDIQSFIQ
YVRSFTQPITQVAQVSNMLQSTAAAAERVFEFLSEEEEDQTVEHPVHLERVKGEVDFNHVRFGYQPDKVIIHDFSCHVEP
GQTVAIVGPTGAGKTTMVKLLMRFYDVNKGNISVDGHDLRSFNRSELRESFGMVLQDTWLFKGTIMENIRYGRLDATDDE
VIAAAKAAHAHHFIQTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNPVMILDEATSSVDTRTEARIQKAMNNLMKG
RTSFVIAHRLSTIKDADVILVMKDGDIIEQGDHETLLAKNGFYAKLYNSQFEAVTA

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1081775 ACK2I0_RS11195 WP_028528126.1 2421396..2423246(-) (rcrQ) [Ruminococcus gauvreauii strain SFAD33]
ATGAGCGAGACACATGAAAGACCCCAGAGACCGGGCCGCATGCATGGACCGGGACGGGGAATGGTTCCGGGAGAGAAGGC
TCAGGACTTTAAGGGAACGATCAGAAAACTGCTGGCTTATATGGGGCGCTACAAATTTGCGCTGATCGGTGTATTCATAT
TTGCAGTCGGCGGAACAGCATTTAATATTGTAGGACCGAAGATCCTTGGAAAGGCGACGACGGAGATCTTTAACGGCCTT
GTCGGAAAGATCTCGGGAAGCGGCGGCATAGACTTTGAAAAGATCGGCAGGATACTGCTGATACTGATCGCGCTGTACTT
GATCAGTGCACTGCTGACATTTATCCAGGGATTTATCATGACCGGGATATCGCAGAAGCTCTGTTACCGGTTCCGGGAAG
AAATTTCTCAGAAGATCAACAGAATGCCGATGAAGTATTTTGAGTCCCGGACTGTCGGAGAAGTCCTCTCAAGGATTACG
AATGATGTTGATACCCTTGGACAGAGTCTGAATCAGAGTGTTACTCAGCTGATTACTTCGGTGACTATGATTATCGGTAT
TCTGATCATGATGCTTTCCATCAGTCCGCTGATGACAGTAATTGCACTTGTGATCCTGCCGGTATCCCTGGGACTGATCG
CAGTCGTGGTCAAGTTTTCGCAGAAATACTTTGTAGCGCAGCAGAAATATCTGGGTAAGATCAACGGGCAGGTGGAAGAA
GTCTACAGCGGACATACGATCGTTCAGGCATTCAATAAAGAGGATGAGATGGAGCATGAATTCGATGAGACAAATGATGT
ACTGTTTCAGTCGGCCTGGAAATCGCAGTTCCTGTCCGGCATGATGCAGCCGATCATGAACTTTGTGGGGAATCTCGGAT
ACGTTGCGGTTGCGGTAGTCGGGGCATTTCTCACTGTTAAAAATATGATTGAAGTCGGAGATATTCAGTCATTTATCCAG
TATGTAAGGAGTTTTACACAACCGATCACCCAGGTGGCGCAGGTATCCAATATGCTGCAGTCGACTGCTGCAGCCGCGGA
GCGTGTGTTTGAATTCCTCAGCGAGGAGGAAGAGGACCAGACGGTGGAACATCCGGTTCATCTGGAACGTGTAAAGGGTG
AGGTGGATTTCAACCATGTGCGGTTCGGTTATCAGCCTGATAAGGTAATCATCCATGACTTCAGCTGTCATGTGGAACCG
GGGCAGACAGTGGCGATCGTAGGTCCGACGGGCGCCGGAAAGACGACGATGGTAAAACTGCTGATGCGTTTTTATGATGT
CAACAAAGGAAATATCAGTGTTGACGGTCATGACCTGCGCAGCTTCAACCGAAGCGAACTCAGGGAGAGCTTCGGTATGG
TACTGCAGGATACATGGCTGTTCAAGGGTACCATTATGGAGAATATCCGTTACGGGCGGCTGGATGCTACCGATGATGAA
GTCATAGCAGCAGCAAAAGCGGCACATGCGCATCATTTCATTCAGACGCTGCCGGGCGGGTACCAGATGGAACTCAATGA
AGATGCCAGCAATGTGTCACAGGGGCAGAAACAGCTGCTGACCATTGCGAGAGCTATCCTGGCGGATAATCCGGTCATGA
TACTCGACGAGGCGACCAGCTCGGTTGATACGAGAACAGAAGCGCGCATCCAGAAAGCCATGAACAATCTGATGAAAGGG
CGCACCAGTTTCGTGATCGCGCACCGGCTCTCGACGATCAAAGATGCGGATGTCATTCTGGTCATGAAGGACGGTGACAT
TATCGAACAGGGGGATCATGAAACCCTTCTGGCGAAGAACGGATTCTATGCAAAGCTGTATAACTCTCAGTTTGAGGCTG
TAACTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-328)

ABC transporter (ABC_tran)

(392-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.541

94.805

0.489

Multiple sequence alignment