Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACK2I0_RS05300 Genome accession   NZ_CP176635
Coordinates   1140864..1142225 (+) Length   453 a.a.
NCBI ID   WP_411337719.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain SFAD33     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1135864..1147225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2I0_RS05280 cysK 1136296..1137228 (+) 933 WP_028529069.1 cysteine synthase A -
  ACK2I0_RS05285 - 1137426..1137803 (+) 378 WP_028529070.1 GntR family transcriptional regulator -
  ACK2I0_RS05290 - 1137818..1140271 (+) 2454 WP_411337718.1 ATP-dependent Clp protease ATP-binding subunit -
  ACK2I0_RS05295 - 1140369..1140782 (+) 414 WP_028529072.1 hypothetical protein -
  ACK2I0_RS05300 radA 1140864..1142225 (+) 1362 WP_411337719.1 DNA repair protein RadA Machinery gene
  ACK2I0_RS05305 cooS 1142333..1144216 (+) 1884 WP_411337720.1 anaerobic carbon-monoxide dehydrogenase catalytic subunit -
  ACK2I0_RS05310 - 1144229..1144681 (+) 453 WP_411337721.1 4Fe-4S dicluster domain-containing protein -
  ACK2I0_RS05315 - 1144678..1145898 (+) 1221 WP_411337722.1 NAD(P)/FAD-dependent oxidoreductase -
  ACK2I0_RS05320 - 1146106..1147188 (+) 1083 WP_411337723.1 NlpC/P60 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49348.04 Da        Isoelectric Point: 7.2128

>NTDB_id=1081772 ACK2I0_RS05300 WP_411337719.1 1140864..1142225(+) (radA) [Ruminococcus gauvreauii strain SFAD33]
MAKARKTIFFCQNCGYESAKWMGQCPGCREWNTLVEEPVAERTSKKAAGRKNHVEPVQLSRIQTETEERLHTNIGELDRV
LGGGIVQGSMTLVGGDPGIGKSTLLLQVCRKIAEQEKKVLYISGEESLAQIKLRAQRIGSFNEYMLLLCETNLADIRSAV
EQQKPDVLIIDSIQTMYDEEVSSAPGSVSQVRESTAALMQIAKGMGVSVFIVGHVTKDGNVAGPRVLEHMVDTVLYFEGD
RHASYRILRSVKNRFGSTNEIGVFEMCQTGLAEVKNPSEFMLNGKPEGASGSVVACSMEGTRPILIEVQALVCRSNFGIP
RRTAAGTDFNRVNLLMAVLEKRGGMNLSDSDAYVNIAGGIKMTEPAIDLGILLAIASSYRDIVIPESVVAFGEVGLSGEV
RAVSMALQRVQEAKKLGFETVILPKVCRFAVKEVTGIRLIFVENIKDAISAIK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1081772 ACK2I0_RS05300 WP_411337719.1 1140864..1142225(+) (radA) [Ruminococcus gauvreauii strain SFAD33]
ATGGCAAAAGCGAGAAAGACTATATTTTTCTGCCAGAATTGTGGATATGAATCCGCAAAATGGATGGGACAGTGCCCCGG
ATGCAGAGAGTGGAATACACTGGTGGAAGAACCGGTGGCAGAACGGACATCAAAAAAAGCGGCTGGCAGAAAGAATCATG
TGGAACCGGTACAGCTGTCACGGATTCAGACGGAGACAGAGGAACGTCTTCATACGAATATCGGAGAGCTGGACCGGGTT
CTCGGAGGAGGAATCGTACAGGGTTCGATGACTCTGGTGGGCGGAGACCCGGGAATCGGCAAATCCACACTGCTTCTTCA
GGTATGCAGGAAGATTGCAGAACAGGAAAAGAAAGTATTGTATATCTCGGGTGAGGAGTCTCTTGCACAGATTAAACTGC
GCGCGCAGAGAATCGGCAGTTTTAATGAATATATGCTGCTGCTGTGTGAGACAAACCTGGCAGACATCAGGAGTGCCGTG
GAACAGCAAAAACCGGATGTCCTGATCATTGATTCCATACAGACCATGTACGATGAGGAGGTGAGTTCAGCTCCCGGCAG
TGTTTCACAGGTTCGCGAATCGACGGCCGCGCTGATGCAGATTGCGAAAGGTATGGGTGTTTCTGTATTTATCGTCGGAC
ATGTGACAAAGGACGGAAATGTGGCAGGACCGCGGGTGCTGGAACACATGGTAGATACCGTCCTGTATTTCGAAGGTGAT
CGTCATGCTTCCTACCGTATCCTGCGCAGTGTGAAGAACCGTTTTGGCTCGACGAATGAAATCGGAGTATTTGAGATGTG
CCAGACGGGTCTCGCAGAGGTAAAAAATCCTTCGGAGTTTATGCTGAACGGTAAACCTGAGGGAGCATCGGGGTCAGTTG
TGGCATGTTCCATGGAGGGGACCAGGCCGATACTGATCGAGGTCCAGGCACTGGTTTGCAGGAGTAATTTCGGAATACCA
AGAAGGACGGCGGCGGGAACGGATTTTAACCGTGTGAATCTTTTGATGGCCGTTCTGGAAAAACGGGGCGGCATGAACCT
CTCTGACAGCGATGCATACGTCAATATAGCCGGAGGAATCAAGATGACAGAACCGGCGATCGACCTGGGCATTCTCCTCG
CGATTGCTTCGAGTTACCGTGATATTGTGATTCCGGAAAGCGTAGTTGCTTTTGGCGAAGTAGGACTGAGCGGGGAAGTA
CGGGCAGTCAGCATGGCGCTTCAGCGTGTTCAGGAGGCGAAAAAACTAGGATTCGAGACGGTGATTTTGCCCAAAGTATG
CAGGTTCGCAGTGAAAGAGGTTACGGGGATCCGTTTGATCTTTGTGGAAAATATAAAAGATGCAATATCTGCCATAAAAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(341-425)

AAA domain (AAA_25)

(61-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.629

100

0.556
  radA Streptococcus mitis SK321

52.097

100

0.521
  radA Streptococcus mitis NCTC 12261

52.097

100

0.521
  radA Streptococcus pneumoniae Rx1

52.097

100

0.521
  radA Streptococcus pneumoniae D39

52.097

100

0.521
  radA Streptococcus pneumoniae R6

52.097

100

0.521
  radA Streptococcus pneumoniae TIGR4

52.097

100

0.521

Multiple sequence alignment