Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   FH07_RS00065 Genome accession   NZ_CP008697
Coordinates   12721..13713 (+) Length   330 a.a.
NCBI ID   WP_022646319.1    Uniprot ID   -
Organism   Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7721..18713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FH07_RS00040 (FH07_00835) rbsD 7845..8264 (+) 420 WP_000715936.1 D-ribose pyranase -
  FH07_RS00045 (FH07_00840) rbsA 8272..9777 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  FH07_RS00050 (FH07_00845) rbsC 9782..10747 (+) 966 WP_022646318.1 ribose ABC transporter permease -
  FH07_RS00055 (FH07_00850) rbsB 10772..11662 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  FH07_RS00060 (FH07_00855) rbsK 11788..12717 (+) 930 WP_001361791.1 ribokinase -
  FH07_RS00065 (FH07_00860) cytR 12721..13713 (+) 993 WP_022646319.1 ribose operon transcriptional repressor RbsR Regulator
  FH07_RS00070 (FH07_00865) mdtD 13679..15106 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  FH07_RS00075 (FH07_00870) yieP 15129..15821 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2098

>NTDB_id=108175 FH07_RS00065 WP_022646319.1 12721..13713(+) (cytR) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=108175 FH07_RS00065 WP_022646319.1 12721..13713(+) (cytR) [Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGATGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361

Multiple sequence alignment