Detailed information NTG1081643

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ACK2I2_RS03800
• Genome accession: NZ_CP176629
• Coordinates: 810390..811754 (-)
• Length: 454 a.a.
• NCBI ID: WP_009244963.1
• Uniprot ID: A0A829NTV7
• Organism: Mediterraneibacter gnavus strain SFAD61
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 805390..816754

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK2I2_RS03800	radA	810390..811754 (-)	1365	WP_009244963.1	DNA repair protein RadA	Machinery gene
ACK2I2_RS03805	-	811848..812261 (-)	414	WP_004841691.1	hypothetical protein	-
ACK2I2_RS03810	-	812362..814803 (-)	2442	WP_004841690.1	ATP-dependent Clp protease ATP-binding subunit	-
ACK2I2_RS03815	-	814816..815184 (-)	369	WP_004841688.1	GntR family transcriptional regulator	-
ACK2I2_RS03820	dapF	815296..816153 (-)	858	WP_022038593.1	diaminopimelate epimerase	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49461.39 Da
• Isoelectric Point: 7.5314

>NTDB_id=1081643 ACK2I2_RS03800 WP_009244963.1 810390..811754(-) (radA) [Mediterraneibacter gnavus strain SFAD61]
MAKGKKSIFFCQNCGHEEAKWLGQCPVCKEWNTFAEEKVSAGLSRGTTAAAKQSKTAEVVPLSQISARDDTRMLTGMKEL
DRVLGGGIVSGSLVLVGGDPGIGKSTLLLQVCQRLSASRKILYISGEESQTQIKLRANRMGSFTDHMLLLCETNLDTIRT
AIERQNPELVIIDSIQTMYNEEVSSAPGSVSQVRESTHVLMQLAKGMGIPIFIVGHVTKEGTVAGPRVLEHMVDTVLYFE
GDRHASYRILRAVKNRFGSTNEIGVFEMRREGLVEVENPSEYMLSGKPENASGSVVACSMEGTRPILIEIQALVCQSNFG
MPRRTAAGTDYNRVNLLMAVLEKRIGLPLSNYDAYVNIAGGIKMNEPAIDLGIIMALVSSYKNRAIDEKMIVFGEVGLSG
EVRAVSMPEQRVAEAKKLGFETCILPKVCLDMVKEIKGIKLLGVGNISDAINLL

Nucleotide

• Length: 1365 bp

>NTDB_id=1081643 ACK2I2_RS03800 WP_009244963.1 810390..811754(-) (radA) [Mediterraneibacter gnavus strain SFAD61]
ATGGCAAAAGGAAAGAAAAGTATTTTTTTCTGTCAGAATTGCGGACATGAAGAGGCAAAATGGCTGGGGCAATGTCCGGT
TTGTAAAGAATGGAATACATTCGCAGAAGAAAAAGTGAGTGCCGGATTGAGCCGCGGGACAACGGCAGCTGCAAAGCAGA
GTAAAACAGCAGAAGTAGTTCCGCTTTCTCAGATCAGTGCCAGGGATGATACCAGGATGCTGACCGGGATGAAAGAACTG
GATCGGGTGCTTGGAGGAGGTATCGTCTCCGGTTCTCTCGTTCTGGTCGGAGGGGACCCGGGGATTGGAAAATCAACCCT
GTTATTGCAAGTGTGTCAGAGGCTGTCGGCATCAAGAAAAATTTTATATATTTCAGGAGAGGAGTCGCAGACTCAGATCA
AATTGCGTGCAAATCGTATGGGAAGTTTTACAGATCATATGCTGTTGTTATGTGAAACAAATCTGGATACCATACGTACA
GCCATTGAGAGACAAAATCCGGAGCTTGTGATCATTGATTCGATTCAAACGATGTACAATGAAGAAGTATCCTCAGCGCC
GGGAAGTGTTTCGCAGGTAAGAGAATCTACCCATGTGCTGATGCAGCTGGCAAAGGGGATGGGGATTCCGATCTTTATTG
TTGGACATGTGACAAAGGAGGGGACTGTGGCAGGTCCGAGAGTGCTGGAACATATGGTGGATACGGTACTTTATTTTGAG
GGAGACAGACATGCTTCCTATCGGATTCTGCGTGCGGTAAAAAACCGTTTTGGTTCTACCAACGAGATCGGTGTGTTTGA
AATGCGAAGAGAAGGACTGGTAGAAGTGGAAAACCCCTCCGAATATATGCTGAGCGGAAAGCCGGAAAATGCATCTGGTT
CTGTTGTGGCATGCTCTATGGAAGGAACACGTCCGATTCTGATCGAGATTCAGGCGCTGGTCTGCCAGAGTAACTTCGGA
ATGCCAAGAAGAACGGCAGCAGGAACGGATTATAATCGTGTAAATCTTCTGATGGCGGTACTGGAAAAAAGAATTGGACT
GCCGCTGTCAAATTATGATGCCTATGTCAACATTGCCGGAGGGATTAAAATGAATGAACCGGCGATTGATCTGGGAATCA
TCATGGCGCTGGTTTCCAGTTACAAGAACCGGGCGATTGATGAAAAGATGATCGTATTTGGAGAAGTTGGATTAAGCGGA
GAGGTGCGTGCAGTCAGCATGCCGGAACAGCGAGTGGCAGAGGCTAAAAAACTGGGATTTGAGACCTGTATCCTTCCCAA
AGTATGTCTGGATATGGTAAAAGAAATCAAGGGAATCAAACTACTGGGGGTAGGAAATATCAGTGATGCGATAAACCTTC
TGTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• Subunit ChlI of Mg-chelatase (ChlI) (345-427)

• AAA domain (AAA_25) (70-221)

3D structure

• AlphaFold DB: A0A829NTV7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	56.512	99.78	0.564
radA	Streptococcus mitis NCTC 12261	54.626	100	0.546
radA	Streptococcus pneumoniae Rx1	54.405	100	0.544
radA	Streptococcus pneumoniae D39	54.405	100	0.544
radA	Streptococcus pneumoniae R6	54.405	100	0.544
radA	Streptococcus pneumoniae TIGR4	54.405	100	0.544
radA	Streptococcus mitis SK321	54.185	100	0.542