Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACK2JE_RS02100 Genome accession   NZ_CP176625
Coordinates   424123..425886 (-) Length   587 a.a.
NCBI ID   WP_013382599.1    Uniprot ID   A0AB74F473
Organism   Eubacterium callanderi strain SFAD75     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 419123..430886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2JE_RS02085 ahpC 419857..420423 (+) 567 WP_013382603.1 alkyl hydroperoxide reductase subunit C -
  ACK2JE_RS02090 - 420440..422107 (+) 1668 WP_013382602.1 FAD-dependent oxidoreductase -
  ACK2JE_RS02095 rcrQ 422295..424130 (-) 1836 WP_013382600.1 ABC transporter ATP-binding protein Regulator
  ACK2JE_RS02100 rcrP 424123..425886 (-) 1764 WP_013382599.1 ABC transporter ATP-binding protein Regulator
  ACK2JE_RS02105 - 425952..426125 (-) 174 WP_013382598.1 cysteine-rich KTR domain-containing protein -
  ACK2JE_RS02110 - 426118..426600 (-) 483 WP_013382597.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACK2JE_RS02115 - 426874..427026 (+) 153 WP_013382596.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64116.60 Da        Isoelectric Point: 8.2120

>NTDB_id=1081598 ACK2JE_RS02100 WP_013382599.1 424123..425886(-) (rcrP) [Eubacterium callanderi strain SFAD75]
MIKILKNLTTKEWGLVAIVLVLIVFQVWIDLTLPEFMGKITELVQTPGSGMQAILFAGIRMLLLTLASVAVSVVITGLAA
RIAANLSSRLRAGLFNKVQSFTMQEINNFSISSLITRTTNDITQVQMLMVIGLQILIKSPILALWAIVKIMGKSWQWSAA
TGIAVAILIIVSSIIISLAIPKFKLLQKQTDDLSRVSRENLTGLRVVRAYNAEQYQEDKFEKANSAFTHTNLFSNRLMAA
LMPSVELIMNGLTLSVYWIGAALIASSAVSERVPLFSDMMVFSSYAIQLLMAFMLLGVVLILIPGASVSADRICEVLDTN
PAIQDGIISHTRTATPGEVEFKNVSFKYPNAEDYVLQNISFRASKGETIAFIGSTGCGKSTVINLIPRFYDVTEGGVYVD
GINVKDFTQAALRNKIGYVSQKAILFKGDISSNVSFGSNGNGGVSHEAVTSAISTAQSTDFVEAMEDSYQSYVAPGGTNL
SGGQKQRLSIARAIARKPEILIFDDSFSALDYKTDKLLRGELRHHATDATIIIVAQRIGTIKDADKIIVLDEGRIAGMGT
HRELIKKCDLYKEIAYSQLSKEELENE

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1081598 ACK2JE_RS02100 WP_013382599.1 424123..425886(-) (rcrP) [Eubacterium callanderi strain SFAD75]
TTGATAAAAATACTAAAAAATCTTACCACAAAAGAGTGGGGGCTGGTTGCCATCGTTCTTGTCCTGATTGTTTTTCAAGT
ATGGATTGATTTAACATTACCGGAATTTATGGGGAAAATCACCGAACTTGTTCAGACGCCCGGCAGCGGAATGCAGGCGA
TTTTATTCGCCGGCATCCGGATGCTGCTGCTCACCCTGGCAAGCGTTGCGGTTTCCGTTGTTATCACCGGGCTCGCCGCG
CGAATCGCAGCCAATCTTTCTTCAAGATTGAGAGCAGGCCTGTTTAATAAGGTACAGTCGTTCACAATGCAGGAAATTAA
TAATTTTTCCATTTCCAGTTTAATTACACGAACGACAAACGACATTACACAGGTTCAAATGCTGATGGTAATCGGGCTGC
AAATCCTGATTAAATCACCAATTTTAGCTCTATGGGCCATTGTAAAAATCATGGGCAAAAGCTGGCAGTGGTCAGCCGCG
ACAGGTATTGCAGTTGCGATACTGATTATTGTATCTTCAATAATCATTTCTCTGGCGATCCCAAAATTCAAACTGCTTCA
GAAGCAGACCGACGATTTGAGCCGTGTTTCAAGAGAAAACCTAACCGGCCTTCGGGTTGTCCGTGCCTACAACGCGGAGC
AGTATCAAGAAGATAAATTTGAAAAAGCCAATTCTGCTTTTACCCATACCAACTTATTTTCCAACCGACTAATGGCCGCA
CTGATGCCTTCAGTTGAGCTGATCATGAATGGTTTAACCTTATCGGTATACTGGATTGGCGCTGCGCTCATTGCATCCTC
CGCTGTGTCGGAAAGGGTTCCCTTGTTTTCAGACATGATGGTATTTTCCTCTTATGCCATTCAACTGCTCATGGCCTTCA
TGCTGCTTGGTGTTGTTTTAATCCTGATTCCCGGCGCCAGCGTATCCGCAGACCGCATTTGCGAAGTCCTAGATACCAAT
CCGGCCATTCAGGATGGAATCATCAGCCATACACGCACCGCTACGCCCGGCGAGGTAGAATTTAAAAACGTTAGCTTTAA
ATATCCAAACGCGGAGGATTATGTTCTGCAAAACATCAGCTTTCGGGCAAGCAAGGGCGAAACCATCGCCTTTATCGGCT
CCACAGGCTGTGGCAAGAGTACGGTTATCAACCTCATTCCAAGGTTTTATGATGTTACAGAAGGCGGCGTTTATGTGGAC
GGCATCAATGTCAAGGATTTTACCCAGGCGGCTTTGCGCAATAAAATCGGGTACGTTTCACAGAAGGCCATTCTTTTTAA
AGGGGATATTTCCTCCAATGTGTCCTTTGGTTCAAACGGAAACGGCGGGGTAAGTCATGAGGCCGTTACCTCTGCCATTT
CAACCGCCCAAAGCACAGACTTTGTGGAAGCCATGGAAGATTCCTATCAAAGCTATGTGGCGCCCGGCGGCACCAATCTT
TCCGGCGGACAAAAGCAGCGGCTTTCCATCGCCCGGGCCATTGCAAGAAAGCCCGAAATTTTGATATTTGACGATAGTTT
CTCAGCCCTTGACTATAAAACCGATAAGTTGCTGCGAGGCGAACTGAGACATCATGCCACAGACGCCACCATTATCATTG
TGGCTCAGCGCATCGGAACTATTAAGGATGCCGATAAAATTATTGTTTTAGATGAAGGCCGGATTGCCGGGATGGGCACA
CACCGCGAATTGATCAAAAAATGCGATTTATACAAAGAAATTGCCTATTCTCAACTCTCAAAGGAGGAACTGGAAAATGA
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.498

100

0.504

Multiple sequence alignment