Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACK2JA_RS13345 Genome accession   NZ_CP176622
Coordinates   2710761..2712131 (+) Length   456 a.a.
NCBI ID   WP_411329239.1    Uniprot ID   -
Organism   Blautia hansenii strain SFAD90     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2705761..2717131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2JA_RS13325 purD 2705973..2707247 (+) 1275 WP_003022492.1 phosphoribosylamine--glycine ligase -
  ACK2JA_RS13330 - 2707345..2707713 (+) 369 WP_003022491.1 GntR family transcriptional regulator -
  ACK2JA_RS13335 - 2707728..2710157 (+) 2430 WP_022239701.1 ATP-dependent Clp protease ATP-binding subunit -
  ACK2JA_RS13340 - 2710259..2710672 (+) 414 WP_009246453.1 hypothetical protein -
  ACK2JA_RS13345 radA 2710761..2712131 (+) 1371 WP_411329239.1 DNA repair protein RadA Machinery gene
  ACK2JA_RS13350 - 2712255..2713532 (+) 1278 WP_003022485.1 adenylosuccinate synthase -
  ACK2JA_RS13355 - 2713591..2714790 (-) 1200 WP_330014154.1 coenzyme F420-0:L-glutamate ligase -
  ACK2JA_RS13360 - 2714929..2715615 (-) 687 WP_270388012.1 transcriptional regulator -
  ACK2JA_RS13365 - 2715772..2716146 (+) 375 WP_003022479.1 RidA family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49476.25 Da        Isoelectric Point: 7.1573

>NTDB_id=1081550 ACK2JA_RS13345 WP_411329239.1 2710761..2712131(+) (radA) [Blautia hansenii strain SFAD90]
MAKGKKTLFFCQNCGYESPKWLGQCPGCREWNSFVEETVSATAKGKTTASGSTTGKKNEPVILADISIQENDRIKTEIEE
LDRVLGGGIVPGSMVLVGGDPGIGKSTLLLQVCRQLTGKGHKVLYVSGEESLGQIKLRAKRIGEFNENLLLLCETNLENI
RSVIEKVKPEMVVIDSIQTMYNEEVSSAPGSVSQVRESTGVLMQIAKGMGISVFIVGHVTKDGSVAGPRVLEHMVDTVLY
FEGDRQVIYRILRGVKNRFGSTNEIGVFEMREKGLMEVKNPSQVMLNGRPTDASGTAVVCSVEGTRPILIEIQALVTRTN
FGLPRRTSVGIDYNRVNLLMAVLEKRAGLHLGDCDAYVNLAGGMKLGEPAIDLGVVLAIVSSYRNQVIDEQTLIFGEVGL
SGEVRGVSMAESRVREAEKLGFTSCIMPKANVESLQGKYEIKLIGVANIKEAMNCI

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1081550 ACK2JA_RS13345 WP_411329239.1 2710761..2712131(+) (radA) [Blautia hansenii strain SFAD90]
ATGGCAAAAGGGAAAAAAACATTGTTTTTCTGTCAAAATTGTGGGTATGAGTCTCCGAAGTGGCTGGGGCAATGTCCGGG
ATGCAGGGAATGGAATTCTTTTGTGGAAGAGACGGTATCTGCAACCGCAAAAGGAAAAACAACAGCTTCAGGAAGTACGA
CAGGGAAGAAAAATGAACCGGTTATTCTTGCAGATATTTCCATACAGGAAAATGACAGAATAAAAACAGAAATAGAAGAG
CTGGACAGAGTACTGGGAGGTGGTATTGTTCCCGGTTCTATGGTTCTGGTGGGAGGAGATCCGGGTATCGGAAAATCTAC
CCTTCTTCTTCAGGTGTGCAGACAGCTTACGGGAAAGGGACATAAGGTTTTATACGTTTCCGGCGAGGAATCTTTGGGAC
AGATTAAGCTAAGAGCAAAAAGAATAGGAGAATTTAATGAAAATTTGTTGCTTTTATGTGAAACAAATTTAGAAAACATT
CGTAGCGTCATTGAAAAGGTGAAACCGGAAATGGTAGTGATCGACTCTATTCAGACTATGTATAATGAGGAAGTGTCTTC
TGCACCAGGCAGTGTCTCTCAGGTGAGGGAGTCTACAGGTGTTCTTATGCAGATTGCAAAAGGAATGGGGATTTCTGTCT
TCATTGTTGGACATGTTACAAAAGATGGAAGTGTGGCAGGTCCCAGAGTACTGGAGCACATGGTAGATACGGTGTTGTAT
TTTGAAGGAGACAGGCAGGTGATTTACCGTATTTTAAGAGGAGTAAAAAATCGATTTGGCTCGACAAATGAAATTGGTGT
TTTTGAAATGCGGGAAAAAGGGCTTATGGAAGTGAAAAATCCATCGCAGGTTATGTTAAATGGTAGACCTACAGATGCCT
CCGGAACTGCGGTTGTTTGCTCTGTTGAAGGGACACGTCCTATTTTGATTGAAATACAGGCGCTTGTAACCAGAACAAAC
TTCGGCTTGCCAAGACGTACTTCGGTAGGAATTGATTATAATCGTGTAAATTTGCTTATGGCAGTTTTAGAGAAAAGAGC
AGGGCTTCATTTGGGAGATTGCGATGCTTATGTTAATCTGGCAGGAGGAATGAAACTTGGAGAACCGGCTATTGATTTAG
GTGTGGTTCTTGCCATTGTATCCAGCTATAGAAATCAGGTAATTGATGAGCAGACTTTAATTTTTGGAGAAGTGGGACTT
TCAGGAGAAGTACGTGGTGTCAGTATGGCGGAAAGCAGAGTGAGAGAAGCAGAAAAACTGGGATTTACTTCCTGTATTAT
GCCAAAGGCAAATGTAGAAAGTCTGCAGGGAAAATATGAGATTAAACTCATTGGTGTAGCTAATATTAAAGAGGCAATGA
ACTGTATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-431)

AAA domain (AAA_25)

(70-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.395

99.342

0.57
  radA Streptococcus mitis SK321

57.395

99.342

0.57
  radA Streptococcus mitis NCTC 12261

57.395

99.342

0.57
  radA Streptococcus pneumoniae Rx1

57.395

99.342

0.57
  radA Streptococcus pneumoniae D39

57.395

99.342

0.57
  radA Streptococcus pneumoniae R6

57.395

99.342

0.57
  radA Streptococcus pneumoniae TIGR4

57.395

99.342

0.57

Multiple sequence alignment