Detailed information NTG1081515

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CLC19245_RS06230
• Genome accession: NZ_CP176606
• Coordinates: 1192732..1193646 (-)
• Length: 304 a.a.
• NCBI ID: WP_220523768.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. concheus strain RM19245
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1187732..1198646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLC19245_RS06205 (CLC19245_01226)	mgtE	1188070..1189413 (+)	1344	WP_220523763.1	magnesium transporter	-
CLC19245_RS06210 (CLC19245_01227)	tpx	1189426..1189944 (+)	519	WP_149062569.1	thiol peroxidase	-
CLC19245_RS06215 (CLC19245_01228)	-	1189941..1191326 (-)	1386	WP_220523765.1	replicative DNA helicase	-
CLC19245_RS06220 (CLC19245_01229)	cysK	1191339..1192241 (-)	903	WP_039668729.1	cysteine synthase A	-
CLC19245_RS06225 (CLC19245_01230)	-	1192338..1192640 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
CLC19245_RS06230 (CLC19245_01231)	waaF	1192732..1193646 (-)	915	WP_220523768.1	lipopolysaccharide heptosyltransferase II	Regulator
CLC19245_RS06235 (CLC19245_01232)	-	1193704..1194507 (+)	804	WP_220523769.1	glycosyltransferase family 2 protein	-
CLC19245_RS06240 (CLC19245_01233)	-	1194443..1195054 (-)	612	WP_257395392.1	CatB-related O-acetyltransferase	-
CLC19245_RS06245 (CLC19245_01234)	-	1195251..1195919 (-)	669	WP_220523774.1	cytidylyltransferase domain-containing protein	-
CLC19245_RS06250 (CLC19245_01235)	neuC	1195916..1197031 (-)	1116	WP_257395393.1	UDP-N-acetylglucosamine 2-epimerase	-
CLC19245_RS06255 (CLC19245_01236)	neuB1	1197028..1198059 (-)	1032	WP_257395064.1	sialic acid synthase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34768.98 Da
• Isoelectric Point: 10.3307

>NTDB_id=1081515 CLC19245_RS06230 WP_220523768.1 1192732..1193646(-) (waaF) [Campylobacter lari subsp. concheus strain RM19245]
MNIFINLPTWLGDSVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKVTSNVLKLPIKAKSTQKLLGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEQFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNVKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1081515 CLC19245_RS06230 WP_220523768.1 1192732..1193646(-) (waaF) [Campylobacter lari subsp. concheus strain RM19245]
ATGAATATTTTTATCAATCTTCCCACTTGGCTTGGCGATTCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTCAAAGTCACTTCAAATGTTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATCCAGGCGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTCATCAAATTTTGATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGAGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACCTCACCTTGGCAAAAAAATGTTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.013	100	0.661