Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CLC19224_RS01980 Genome accession   NZ_CP176605
Coordinates   369377..370768 (+) Length   463 a.a.
NCBI ID   WP_149062098.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19224     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364377..375768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19224_RS01965 (CLC19224_00388) - 364762..365406 (+) 645 WP_240385365.1 HAD family hydrolase -
  CLC19224_RS01970 (CLC19224_00389) nifJ 365524..369078 (+) 3555 WP_257398532.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CLC19224_RS01975 (CLC19224_00390) - 369145..369405 (+) 261 WP_148308367.1 hypothetical protein -
  CLC19224_RS01980 (CLC19224_00391) ctsD 369377..370768 (+) 1392 WP_149062098.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CLC19224_RS01985 (CLC19224_00392) - 370749..371078 (+) 330 WP_052239429.1 transformation system, membrane protein CtsX -
  CLC19224_RS01990 (CLC19224_00393) - 371119..372575 (+) 1457 Protein_391 GspE/PulE family protein -
  CLC19224_RS01995 (CLC19224_00394) - 372572..373732 (+) 1161 WP_257395415.1 type II secretion system F family protein -
  CLC19224_RS02000 (CLC19224_00395) - 373729..374481 (-) 753 WP_039668085.1 TSUP family transporter -
  CLC19224_RS02005 (CLC19224_00396) - 374466..375215 (-) 750 WP_149062102.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52579.47 Da        Isoelectric Point: 7.9605

>NTDB_id=1081491 CLC19224_RS01980 WP_149062098.1 369377..370768(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19224]
MKKIIFLFISILTFTNVFALQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGIKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1081491 CLC19224_RS01980 WP_149062098.1 369377..370768(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19224]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCATTACAGTGTCATCAACGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAACTATCTGCACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATTTAAAAGATCTAAATAAAAGACTTAAAAAACAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTATTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACTACTGTACTTTCTAACCCAAAACTTATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAAGGTACTGAAAATGGTACAACTATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGTGGATTGATTAGCAAAAAT
ACGATTAGTAACCATAATGAAGTAAGTGCTTTATCTAAGATACCACTTTTTGGCGCTTTGTTTCAAGGAAAGCAAAATTT
GGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

57.051

100

0.577

Multiple sequence alignment