Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CLC19222_RS01980 Genome accession   NZ_CP176604
Coordinates   370172..371563 (+) Length   463 a.a.
NCBI ID   WP_240388281.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19222     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365172..376563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19222_RS01965 (CLC19222_00388) - 365556..366200 (+) 645 WP_257403657.1 HAD family hydrolase -
  CLC19222_RS01970 (CLC19222_00389) nifJ 366319..369873 (+) 3555 WP_257403655.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CLC19222_RS01975 (CLC19222_00390) - 369940..370200 (+) 261 WP_148308367.1 hypothetical protein -
  CLC19222_RS01980 (CLC19222_00391) ctsD 370172..371563 (+) 1392 WP_240388281.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CLC19222_RS01985 (CLC19222_00392) - 371544..371873 (+) 330 WP_257403651.1 hypothetical protein -
  CLC19222_RS01990 (CLC19222_00393) - 371866..373371 (+) 1506 WP_257403649.1 GspE/PulE family protein -
  CLC19222_RS01995 (CLC19222_00394) - 373368..374528 (+) 1161 WP_257403647.1 type II secretion system F family protein -
  CLC19222_RS02000 (CLC19222_00395) - 374525..375277 (-) 753 WP_257396281.1 TSUP family transporter -
  CLC19222_RS02005 (CLC19222_00396) - 375262..376011 (-) 750 WP_257403646.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52595.47 Da        Isoelectric Point: 7.9605

>NTDB_id=1081474 CLC19222_RS01980 WP_240388281.1 370172..371563(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19222]
MKKIIFLFISILTFTNVFALQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSTKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNG
DDNDFIINKGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1081474 CLC19222_RS01980 WP_240388281.1 370172..371563(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19222]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCATTACAGTGTCATCAACGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGTATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAATTATCTGCACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGCTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGACTCAAGACCTAAAC
AGGGTGATTATGATAGTACTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTCGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATTTAAAAGATTTAAATAAAAGACTTAAAAAACAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGCGGGATTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTGTTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACTACTGTACTTTCTAACCCAAAACTTATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAGGGTACTGAAAATGGTACAACTATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGTGGATTGATTAGTAAAAAT
ACGATTAGTAACCATAATGAAGTAAGTGCTTTGTCTAAGATACCACTTTTTGGCGCTTTGTTTCAAGGAAAGCAAAATTT
GGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTAAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

57.265

100

0.579

Multiple sequence alignment