Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | CLC19214_RS06650 | Genome accession | NZ_CP176603 |
| Coordinates | 1261908..1262822 (-) | Length | 304 a.a. |
| NCBI ID | WP_257396932.1 | Uniprot ID | - |
| Organism | Campylobacter lari subsp. concheus strain RM19214 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1256085..1303577 | 1261908..1262822 | within | 0 |
Gene organization within MGE regions
Location: 1256085..1303577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLC19214_RS06620 (CLC19214_01291) | - | 1256085..1257242 (+) | 1158 | WP_257396928.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| CLC19214_RS06625 (CLC19214_01292) | mgtE | 1257244..1258587 (+) | 1344 | WP_039668726.1 | magnesium transporter | - |
| CLC19214_RS06630 (CLC19214_01293) | tpx | 1258600..1259118 (+) | 519 | WP_257396929.1 | thiol peroxidase | - |
| CLC19214_RS06635 (CLC19214_01294) | - | 1259115..1260500 (-) | 1386 | WP_257396930.1 | replicative DNA helicase | - |
| CLC19214_RS06640 (CLC19214_01295) | cysK | 1260513..1261415 (-) | 903 | WP_257396931.1 | cysteine synthase A | - |
| CLC19214_RS06645 (CLC19214_01296) | - | 1261513..1261815 (-) | 303 | WP_039619003.1 | HU family DNA-binding protein | - |
| CLC19214_RS06650 (CLC19214_01297) | waaF | 1261908..1262822 (-) | 915 | WP_257396932.1 | glycosyltransferase family 9 protein | Regulator |
| CLC19214_RS06655 (CLC19214_01298) | - | 1262880..1263695 (+) | 816 | WP_257396933.1 | glycosyltransferase family 2 protein | - |
| CLC19214_RS06660 (CLC19214_01299) | - | 1263743..1264417 (+) | 675 | WP_371818805.1 | glycosyltransferase family 25 protein | - |
| CLC19214_RS06665 (CLC19214_01300) | rfbA | 1264414..1265289 (+) | 876 | WP_257396935.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| CLC19214_RS06670 (CLC19214_01301) | rfbB | 1265290..1266318 (+) | 1029 | WP_257396936.1 | dTDP-glucose 4,6-dehydratase | - |
| CLC19214_RS06675 (CLC19214_01302) | - | 1266320..1266724 (+) | 405 | WP_257396937.1 | sugar 3,4-ketoisomerase | - |
| CLC19214_RS06680 (CLC19214_01303) | - | 1266714..1267454 (+) | 741 | WP_257396938.1 | class I SAM-dependent methyltransferase | - |
| CLC19214_RS06685 (CLC19214_01304) | - | 1267451..1268380 (+) | 930 | WP_257396939.1 | GNAT family N-acetyltransferase | - |
| CLC19214_RS06690 (CLC19214_01305) | - | 1268377..1268772 (+) | 396 | WP_257396940.1 | adenylyltransferase/cytidyltransferase family protein | - |
| CLC19214_RS06695 (CLC19214_01306) | - | 1268772..1270037 (+) | 1266 | WP_257396941.1 | CDP-glycerol glycerophosphotransferase family protein | - |
| CLC19214_RS06700 (CLC19214_01307) | - | 1270034..1271095 (+) | 1062 | WP_257396942.1 | glycosyltransferase family 2 protein | - |
| CLC19214_RS06705 (CLC19214_01308) | - | 1271097..1272182 (+) | 1086 | WP_257396943.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| CLC19214_RS06710 (CLC19214_01309) | - | 1272179..1273336 (-) | 1158 | WP_257396944.1 | glycosyltransferase family 2 protein | - |
| CLC19214_RS06715 (CLC19214_01310) | - | 1273340..1274887 (-) | 1548 | WP_257396945.1 | glycosyltransferase family 2 protein | - |
| CLC19214_RS06720 (CLC19214_01311) | - | 1274896..1275768 (-) | 873 | WP_257396946.1 | lipid A biosynthesis lauroyl acyltransferase | - |
| CLC19214_RS06725 (CLC19214_01312) | waaC | 1275765..1276805 (-) | 1041 | WP_240385546.1 | lipopolysaccharide heptosyltransferase I | - |
| CLC19214_RS06730 (CLC19214_01313) | - | 1276876..1277655 (+) | 780 | WP_257396947.1 | 3'-5' exonuclease | - |
| CLC19214_RS06735 (CLC19214_01314) | galE | 1277714..1278700 (+) | 987 | WP_012661952.1 | UDP-glucose 4-epimerase GalE | - |
| CLC19214_RS06740 (CLC19214_01315) | - | 1278694..1280388 (+) | 1695 | WP_257396948.1 | ABC transporter ATP-binding protein | - |
| CLC19214_RS06745 (CLC19214_01316) | - | 1280385..1281449 (+) | 1065 | WP_257396949.1 | glycosyltransferase | - |
| CLC19214_RS06750 (CLC19214_01317) | - | 1281451..1282551 (+) | 1101 | WP_257396950.1 | glycosyltransferase | - |
| CLC19214_RS06755 (CLC19214_01318) | - | 1282553..1284691 (+) | 2139 | WP_257396951.1 | STT3 domain-containing protein | - |
| CLC19214_RS06760 (CLC19214_01319) | pglA | 1284688..1285815 (+) | 1128 | WP_257396952.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| CLC19214_RS06765 (CLC19214_01320) | pglC | 1285808..1286410 (+) | 603 | WP_257396953.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| CLC19214_RS06770 (CLC19214_01321) | pglD | 1286397..1286993 (+) | 597 | WP_257396954.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| CLC19214_RS06775 (CLC19214_01322) | pglE | 1286990..1288150 (+) | 1161 | WP_257396955.1 | UDP-N-acetylbacillosamine transaminase | - |
| CLC19214_RS06780 (CLC19214_01323) | pglF | 1288152..1289915 (+) | 1764 | WP_257396956.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| CLC19214_RS06785 (CLC19214_01324) | - | 1290029..1290406 (+) | 378 | WP_039619063.1 | chemotaxis response regulator CheY | - |
| CLC19214_RS06790 (CLC19214_01325) | - | 1290419..1291255 (+) | 837 | WP_220517051.1 | 50S ribosomal protein L11 methyltransferase | - |
| CLC19214_RS06795 (CLC19214_01326) | ftsH | 1291255..1293177 (+) | 1923 | WP_257396957.1 | ATP-dependent zinc metalloprotease FtsH | - |
| CLC19214_RS06800 (CLC19214_01327) | - | 1293177..1293794 (+) | 618 | WP_257396958.1 | phosphatidylserine decarboxylase | - |
| CLC19214_RS06805 (CLC19214_01328) | pssA | 1293791..1294501 (+) | 711 | WP_257396959.1 | CDP-diacylglycerol--serine O-phosphatidyltransferase | - |
| CLC19214_RS06810 (CLC19214_01329) | - | 1294564..1295118 (+) | 555 | WP_087690065.1 | hypothetical protein | - |
| CLC19214_RS06820 (CLC19214_01331) | - | 1295356..1296825 (+) | 1470 | WP_257396960.1 | DNA methylase | - |
| CLC19214_RS06825 (CLC19214_01332) | ciaB | 1297030..1298865 (-) | 1836 | WP_257396961.1 | invasion protein CiaB | - |
| CLC19214_RS06830 (CLC19214_01333) | - | 1298930..1299334 (+) | 405 | WP_012661971.1 | acyl-CoA thioesterase | - |
| CLC19214_RS06835 (CLC19214_01334) | - | 1299399..1300328 (+) | 930 | WP_257406445.1 | ribose-phosphate pyrophosphokinase | - |
| CLC19214_RS06840 (CLC19214_01335) | - | 1300449..1300670 (+) | 222 | WP_257396962.1 | hypothetical protein | - |
| CLC19214_RS06850 (CLC19214_01337) | - | 1301036..1301446 (-) | 411 | WP_257396963.1 | histidine phosphotransferase | - |
| CLC19214_RS06855 (CLC19214_01338) | ruvB | 1301534..1302544 (+) | 1011 | WP_039668758.1 | Holliday junction branch migration DNA helicase RuvB | - |
| CLC19214_RS06860 (CLC19214_01339) | - | 1302534..1303577 (+) | 1044 | WP_257396964.1 | AI-2E family transporter | - |
Sequence
Protein
Download Length: 304 a.a. Molecular weight: 34804.97 Da Isoelectric Point: 10.2336
>NTDB_id=1081466 CLC19214_RS06650 WP_257396932.1 1261908..1262822(-) (waaF) [Campylobacter lari subsp. concheus strain RM19214]
MNIFINLPTWLGDSVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKLLGINAGAHFGSAKRW
EASYFARVAKEFSFTHKILIFGVESEREICDEIEHYLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
EVKTVAIFGSTKFSQTSPWQKDAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF
MNIFINLPTWLGDSVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKLLGINAGAHFGSAKRW
EASYFARVAKEFSFTHKILIFGVESEREICDEIEHYLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
EVKTVAIFGSTKFSQTSPWQKDAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF
Nucleotide
Download Length: 915 bp
>NTDB_id=1081466 CLC19214_RS06650 WP_257396932.1 1261908..1262822(-) (waaF) [Campylobacter lari subsp. concheus strain RM19214]
ATGAATATTTTTATCAATCTTCCCACTTGGCTTGGCGATTCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTCAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGTTTTACGCATAAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTATCTTTTAAAAGAAGGCATAAAGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTGCTCATTACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GAGGTGAAAACAGTAGCTATTTTTGGTTCGACCAAATTTAGTCAAACTTCACCTTGGCAAAAAGATGCTAAAATAGCGCA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTGATAAATTTAGCAAAAACATTTTTTTAA
ATGAATATTTTTATCAATCTTCCCACTTGGCTTGGCGATTCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTCAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGTTTTACGCATAAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTATCTTTTAAAAGAAGGCATAAAGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTGCTCATTACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GAGGTGAAAACAGTAGCTATTTTTGGTTCGACCAAATTTAGTCAAACTTCACCTTGGCAAAAAGATGCTAAAATAGCGCA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTGATAAATTTAGCAAAAACATTTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
64.013 |
100 |
0.661 |