Detailed information NTG1081448

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CLC19179_RS06000
• Genome accession: NZ_CP176602
• Coordinates: 1154610..1155524 (-)
• Length: 304 a.a.
• NCBI ID: WP_220523768.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. concheus strain RM19179
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1149610..1160524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLC19179_RS05975 (CLC19179_01177)	mgtE	1149948..1151291 (+)	1344	WP_220523763.1	magnesium transporter	-
CLC19179_RS05980 (CLC19179_01178)	tpx	1151304..1151822 (+)	519	WP_149062569.1	thiol peroxidase	-
CLC19179_RS05985 (CLC19179_01179)	-	1151819..1153204 (-)	1386	WP_220523765.1	replicative DNA helicase	-
CLC19179_RS05990 (CLC19179_01180)	cysK	1153217..1154119 (-)	903	WP_039668729.1	cysteine synthase A	-
CLC19179_RS05995 (CLC19179_01181)	-	1154216..1154518 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
CLC19179_RS06000 (CLC19179_01182)	waaF	1154610..1155524 (-)	915	WP_220523768.1	lipopolysaccharide heptosyltransferase II	Regulator
CLC19179_RS06005 (CLC19179_01183)	-	1155582..1156385 (+)	804	WP_220523769.1	glycosyltransferase family 2 protein	-
CLC19179_RS06010 (CLC19179_01184)	-	1156365..1157153 (-)	789	WP_220523771.1	CatB-related O-acetyltransferase	-
CLC19179_RS06015 (CLC19179_01185)	-	1157128..1157796 (-)	669	WP_220523774.1	cytidylyltransferase domain-containing protein	-
CLC19179_RS06020 (CLC19179_01186)	neuC	1157793..1158908 (-)	1116	WP_240385539.1	UDP-N-acetylglucosamine 2-epimerase	-
CLC19179_RS06025 (CLC19179_01187)	neuB1	1158905..1159936 (-)	1032	WP_257395064.1	sialic acid synthase	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34768.98 Da
• Isoelectric Point: 10.3307

>NTDB_id=1081448 CLC19179_RS06000 WP_220523768.1 1154610..1155524(-) (waaF) [Campylobacter lari subsp. concheus strain RM19179]
MNIFINLPTWLGDSVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQILVENKKQRYRQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKVTSNVLKLPIKAKSTQKLLGINPGAHFGSAKRW
EASYFARVAKEFSSTHQILIFGVESEREICDEIEQFLLKEGIRAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNVKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1081448 CLC19179_RS06000 WP_220523768.1 1154610..1155524(-) (waaF) [Campylobacter lari subsp. concheus strain RM19179]
ATGAATATTTTTATCAATCTTCCCACTTGGCTTGGCGATTCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAGAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTCAAAGTCACTTCAAATGTTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATCCAGGCGCACATTTTGGAAGTGCGAAAAGATGG
GAAGCAAGCTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCCACTCATCAAATTTTGATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGTGATGAAATTGAACAATTTCTTCTAAAAGAAGGCATAAGGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGAGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACCTCACCTTGGCAAAAAAATGTTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.013	100	0.661