Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CLC19179_RS01585 Genome accession   NZ_CP176602
Coordinates   282379..283557 (+) Length   392 a.a.
NCBI ID   WP_257395263.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19179     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 277379..288557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19179_RS01575 (CLC19179_00312) - 278462..280339 (+) 1878 WP_410689662.1 hypothetical protein -
  CLC19179_RS01580 (CLC19179_00313) - 280412..282382 (+) 1971 WP_257395264.1 capsular polysaccharide biosynthesis protein -
  CLC19179_RS01585 (CLC19179_00314) kpsS 282379..283557 (+) 1179 WP_257395263.1 capsule biosynthesis protein Regulator
  CLC19179_RS01590 (CLC19179_00315) - 283554..285065 (-) 1512 WP_410689663.1 hypothetical protein -
  CLC19179_RS01595 (CLC19179_00316) - 285225..286355 (+) 1131 WP_257395128.1 DUF829 domain-containing protein -
  CLC19179_RS01600 (CLC19179_00317) - 286365..287738 (+) 1374 WP_149062056.1 cytochrome P450 -
  CLC19179_RS01605 (CLC19179_00318) - 287735..288088 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46301.80 Da        Isoelectric Point: 10.1073

>NTDB_id=1081439 CLC19179_RS01585 WP_257395263.1 282379..283557(+) (kpsS) [Campylobacter lari subsp. concheus strain RM19179]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIAIKIPKANVYKVNFNGGDFLFYPFNSINYTKSLAELEDFYKKLFEEKQIQV
ILMYNDCRKIHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWFFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKSTEKFIEEVIVSFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVMGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081439 CLC19179_RS01585 WP_257395263.1 282379..283557(+) (kpsS) [Campylobacter lari subsp. concheus strain RM19179]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCCGGTAAAAATGTTTTGTTACTCCAAGGGCCTGTGGGAGGATTTTTTCG
CAAAATTGCTATAAAAATTCCAAAAGCTAATGTTTATAAAGTAAATTTTAATGGAGGAGATTTTTTATTTTATCCTTTTA
ATAGTATCAATTATACCAAAAGCTTAGCCGAGCTTGAAGACTTTTATAAAAAGCTTTTTGAAGAAAAGCAAATTCAAGTT
ATTTTGATGTATAATGATTGTAGAAAAATTCATGAGATAGCCATCAGTGTAGCCAAGCAAATGGGTATTGAAGTGTGGAT
TTTTGAAGAAGGATATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGGGTAAACGCAAACTCGACCCTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTTTCAAGTACTTTTAAAAATATG
GCCTTTGCTTCGTTTTTATACTGGTTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACATCATAGAAGTTT
AAAACTATTTGACTTTTTACCTTGGCTTTGTTCAGTATATAGAAAAAACAAATATAAAATCACAGAAAAAAGTTTAAACG
AGAAAATTCTTTCTTTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGATACTCAACTTTCCCATCACTAT
AAAAAAAGTACAGAAAAATTTATAGAAGAAGTGATTGTTTCTTTTGCTAATCATGCTAAAGCAAAATCCTATCTAGTTTT
TAAGCATCATCCTATGGATCGTGGTTATAGAGACTATACTAAGCTTATAGAAGATTTGAGCTTAAAATACAATGTCGAGG
GTAGAATTTTATATGTACATGACTTACACTTACCTACACTCTTAATCAATGCAAGAGGTACTATAGTCATAAATAGTACA
GTAGGACTTTCTGCTTTATATCACAACAGCCCTTTAAAAGTTATGGGAAAAGCCTTTTATGATATAGAAGGTTTAACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAGTGTAGAGCATATAAGCCTGATGCGGTTTTGCACGCTAAATTTAGAAATT
ATGTGATATATAAAACTCAAGTCAATGGAAATTTCTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.278

100

0.628

Multiple sequence alignment