Detailed information NTG1081416

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CLC19168_RS06015
• Genome accession: NZ_CP176600
• Coordinates: 1166805..1167719 (-)
• Length: 304 a.a.
• NCBI ID: WP_257402623.1
• Uniprot ID: -
• Organism: Campylobacter lari subsp. concheus strain RM19168
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1161805..1172719

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CLC19168_RS05990 (CLC19168_01184)	mgtE	1162142..1163485 (+)	1344	WP_257402626.1	magnesium transporter	-
CLC19168_RS05995 (CLC19168_01185)	tpx	1163498..1164016 (+)	519	WP_149062569.1	thiol peroxidase	-
CLC19168_RS06000 (CLC19168_01186)	-	1164013..1165398 (-)	1386	WP_257402625.1	replicative DNA helicase	-
CLC19168_RS06005 (CLC19168_01187)	cysK	1165411..1166313 (-)	903	WP_257402624.1	cysteine synthase A	-
CLC19168_RS06010 (CLC19168_01188)	-	1166410..1166712 (-)	303	WP_039619003.1	HU family DNA-binding protein	-
CLC19168_RS06015 (CLC19168_01189)	waaF	1166805..1167719 (-)	915	WP_257402623.1	glycosyltransferase family 9 protein	Regulator
CLC19168_RS06020 (CLC19168_01190)	-	1167777..1168583 (+)	807	WP_257402622.1	glycosyltransferase family 2 protein	-
CLC19168_RS06025 (CLC19168_01191)	-	1168580..1169320 (+)	741	WP_306810597.1	glycosyltransferase family 25 protein	-
CLC19168_RS06030 (CLC19168_01192)	-	1169701..1170357 (+)	657	Protein_1166	glycosyltransferase	-
CLC19168_RS06035 (CLC19168_01193)	-	1170344..1171132 (+)	789	WP_257402621.1	class I SAM-dependent methyltransferase	-
CLC19168_RS06040 (CLC19168_01194)	-	1171129..1172037 (+)	909	WP_306810596.1	glycosyltransferase family 2 protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 34693.91 Da
• Isoelectric Point: 10.3463

>NTDB_id=1081416 CLC19168_RS06015 WP_257402623.1 1166805..1167719(-) (waaF) [Campylobacter lari subsp. concheus strain RM19168]
MNIFINLPTWLGDSVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKHFENAQVLVENKKQRYKQILKARKNFGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNSLKLPIKAKSTQKLLGINAGAHFGSAKRW
EASYFARVAKEFSFTHKILIFGVESEREICDEIEHYLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFGQTSPWQKNAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide

• Length: 915 bp

>NTDB_id=1081416 CLC19168_RS06015 WP_257402623.1 1166805..1167719(-) (waaF) [Campylobacter lari subsp. concheus strain RM19168]
ATGAATATTTTTATCAATCTTCCCACTTGGCTTGGCGATTCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAACACTTTGAAAATGCTCAAGTTT
TAGTAGAAAATAAAAAACAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACTTCGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATTCTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAGGCGAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGTTTTACGCATAAAATTTTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTATCTTTTAAAAGAAGGCATAAAGGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTCGATTTACTCATCACAAATGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACAGTGGCTATTTTTGGTTCGACTAAATTTGGTCAAACTTCACCTTGGCAAAAAAATGCTAAAATAGCGCA
TTTGAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGCCCTTTAAAACACCACAAATGTATGAAAGATTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (109-284)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.013	100	0.661