Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   CLC19168_RS01955 Genome accession   NZ_CP176600
Coordinates   360709..362100 (+) Length   463 a.a.
NCBI ID   WP_257402670.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19168     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355709..367100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19168_RS01940 (CLC19168_00383) - 356094..356738 (+) 645 WP_257402674.1 HAD family hydrolase -
  CLC19168_RS01945 (CLC19168_00384) nifJ 356856..360410 (+) 3555 WP_257402672.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CLC19168_RS01950 (CLC19168_00385) - 360477..360737 (+) 261 WP_148308367.1 hypothetical protein -
  CLC19168_RS01955 (CLC19168_00386) ctsD 360709..362100 (+) 1392 WP_257402670.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CLC19168_RS01960 (CLC19168_00387) - 362081..362410 (+) 330 WP_052239429.1 transformation system, membrane protein CtsX -
  CLC19168_RS01965 (CLC19168_00388) - 362403..363908 (+) 1506 WP_149062099.1 GspE/PulE family protein -
  CLC19168_RS01970 (CLC19168_00389) - 363905..365065 (+) 1161 WP_257402668.1 type II secretion system F family protein -
  CLC19168_RS01975 (CLC19168_00390) - 365062..365814 (-) 753 WP_039668085.1 TSUP family transporter -
  CLC19168_RS01980 (CLC19168_00391) - 365799..366548 (-) 750 WP_039668086.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52565.44 Da        Isoelectric Point: 7.9605

>NTDB_id=1081407 CLC19168_RS01955 WP_257402670.1 360709..362100(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19168]
MKKIIFLFISILTFTNVFALQCHQRFFDISVENKTSLIEILNELGRECGFSIIIKDSLAREKLNHTQNYLHIRKMSLREI
FKLLLMENNLAYEYEKNILKIYGRQVKTFKVHYISSIREGQSITKASVDSRPKQGDYDSAKEADNLVISTDKFDFWEKIS
EEIQALLDENTTKPIINTNAGIITLNATLYELARVEKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGVNWQELAFKLNG
DDNDFIINKGGIKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPLFGALFQGKQNLEDISEIVFIIKPSLIRADKKVLSLKELGFEHEDDMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=1081407 CLC19168_RS01955 WP_257402670.1 360709..362100(+) (ctsD) [Campylobacter lari subsp. concheus strain RM19168]
ATGAAAAAAATAATATTTTTATTTATTAGTATTTTAACTTTTACAAATGTTTTTGCATTACAGTGTCATCAACGCTTTTT
TGATATAAGTGTAGAAAATAAAACTTCTTTGATTGAAATTTTAAATGAACTTGGTAGAGAATGTGGTTTTAGCATTATAA
TAAAAGATTCATTAGCTAGAGAAAAGTTAAATCATACTCAAAACTATCTGCACATAAGAAAAATGTCTTTAAGAGAAATT
TTTAAACTTTTATTGATGGAAAATAATCTTGCTTATGAGTATGAAAAAAATATTTTAAAAATTTATGGAAGACAAGTTAA
AACTTTTAAAGTTCATTATATAAGTTCTATTAGAGAAGGGCAAAGTATTACTAAAGCTTCAGTGGATTCAAGACCTAAAC
AGGGTGATTATGATAGTGCTAAAGAAGCAGATAATTTAGTCATTAGTACAGATAAATTTGATTTTTGGGAAAAAATTTCA
GAAGAAATACAAGCTTTATTAGATGAAAATACAACTAAACCTATTATTAATACTAATGCAGGAATTATCACTTTAAATGC
TACTTTGTATGAGCTTGCAAGAGTTGAAAAATATTTAAAAGATCTAAATAAAAGACTTAAAAAACAAGTTTTAATTGATG
TAAGTATAGTTGCAGTACATTTAAATAAAAGTCATTCAAGTGGGGTTAACTGGCAAGAGCTTGCTTTTAAACTTAATGGA
GATGATAATGATTTTATAATCAATAAAGGCGGTATTAAAAATATTAATCTTAAAGCTAATGTTGAAACTAAGGCTATTTT
AAATTTATTACAAGAAAATGGCAAAACTACTGTACTTTCTAACCCAAAACTTATGGCACTTAATAATCAGCAAGCTATTA
TTTCCATAGGCGATACGATTAATTATCAAGTAAAAGAAAGCTCTAAAGGTACTGAAAATGGTACAACTATTAGTGAAACT
TATAATAATTATTCTATTTTTGTAGGAATTTTACTAAATATTTTGCCAGAAATTTCAGATGATCATAAAATCATGCTTAG
GATTAATCCTAGTTTGAGTGATTTTAAATATAGTGTTGATAATCATAGACAAAATAAACCAAGAAATATAGCACCAGATA
CTATACAAAAAAAGCTTTCTACTGTAGTTGAAGTTGATGATGGACAAACTTTAATTTTGGGTGGATTGATTAGCAAAAAT
ACGATTAGTAACCATAATGAAGTAAGTGCTTTATCTAAGATACCACTTTTTGGCGCTTTGTTTCAAGGAAAGCAAAATTT
GGAAGATATTAGTGAAATAGTTTTTATCATCAAGCCAAGTTTAATAAGAGCTGATAAAAAAGTATTAAGTTTGAAAGAAT
TAGGTTTTGAACATGAAGATGATATGTTTTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

56.838

100

0.575

Multiple sequence alignment