Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CLC19168_RS01605 Genome accession   NZ_CP176600
Coordinates   287622..288800 (+) Length   392 a.a.
NCBI ID   WP_257403165.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19168     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 282622..293800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19168_RS01590 (CLC19168_00313) cysC 283429..284013 (+) 585 WP_257403160.1 adenylyl-sulfate kinase -
  CLC19168_RS01595 (CLC19168_00314) - 284010..285566 (+) 1557 WP_257403162.1 hypothetical protein -
  CLC19168_RS01600 (CLC19168_00315) - 285598..287625 (+) 2028 WP_257403163.1 capsular polysaccharide biosynthesis protein -
  CLC19168_RS01605 (CLC19168_00316) kpsS 287622..288800 (+) 1179 WP_257403165.1 capsule biosynthesis protein Regulator
  CLC19168_RS01610 (CLC19168_00317) - 288797..290305 (-) 1509 WP_410688674.1 hypothetical protein -
  CLC19168_RS01615 (CLC19168_00318) - 290469..291599 (+) 1131 WP_257402728.1 DUF829 domain-containing protein -
  CLC19168_RS01620 (CLC19168_00319) - 291609..292982 (+) 1374 WP_257402726.1 cytochrome P450 -
  CLC19168_RS01625 (CLC19168_00320) - 292979..293332 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46263.78 Da        Isoelectric Point: 10.1073

>NTDB_id=1081406 CLC19168_RS01605 WP_257403165.1 287622..288800(+) (kpsS) [Campylobacter lari subsp. concheus strain RM19168]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIAIKIPKANVYKVNFNGGDFLFYPFNSINYTKSLAELESFYKKLFEEKQIQV
ILMYNDCRKIHEIAINVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWLFAFLLSWYFNNSLHHRSLKLFDFLPWFCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKTTEKFIEEVIVSFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVIGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKDTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081406 CLC19168_RS01605 WP_257403165.1 287622..288800(+) (kpsS) [Campylobacter lari subsp. concheus strain RM19168]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCCGGTAAAAATGTTTTGTTACTCCAAGGGCCTGTGGGAGGATTTTTTCG
CAAAATTGCTATAAAAATTCCAAAAGCTAATGTTTATAAAGTAAATTTTAATGGAGGAGATTTTTTATTTTATCCTTTTA
ATAGTATCAATTATACCAAAAGCTTAGCTGAGCTTGAAAGCTTTTATAAAAAGCTTTTTGAAGAAAAGCAAATTCAAGTT
ATTTTGATGTATAATGATTGTAGAAAAATTCATGAGATAGCCATTAATGTTGCTAAGCAAATGGGTATTGAAGTGTGGAT
TTTTGAAGAAGGTTATATAAGACCAAATTTCATTACTTTTGAAAAAGATGGAGTAAATGCAAACTCTACTTTGCCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTTTCAAGTACTTTTAAAAATATG
GCTTTTGCTTCATTTTTATACTGGCTTTTTGCTTTTTTACTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGTTTTGCTCAGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAACG
AGAAAATTCTTTCTTTAAAACAAAAGTATTTTTTAGCTATTTTACAAGTGCATAATGATACTCAATTGTCTCATCATTAT
AAAAAAACTACAGAAAAATTTATAGAAGAAGTGATTGTTTCTTTTGCTAATCATGCTAAAGCAAAGTCTTATCTAGTTTT
TAAGCATCATCCTATGGATCGTGGTTATAGAGACTATACTAAGCTTATAGAAGATTTGAGTTTAAAATATAATGTTGAAG
GTAGAATTTTATATGTACATGATTTGCATTTGCCTACACTTTTGATCAATGCAAGAGGTACTATAGTTATAAATAGCACA
GTAGGACTTTCTGCTTTATATCACAACAGTCCTTTAAAGGTTATAGGAAAAGCTTTTTACGATATAGAAGGTTTGACTTA
TCAAAAAAGCTTGCATACTTTTTGGAAAGAATGTAGAGCATATAAGCCTGATGCGGTTTTGCACGCTAAATTTAGAAATT
ATGTAATATATAAAACCCAAGTCAATGGAAATTTCTTCAAAGATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.532

100

0.63

Multiple sequence alignment