Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   CLC19156_RS06290 Genome accession   NZ_CP176598
Coordinates   1193377..1194291 (-) Length   304 a.a.
NCBI ID   WP_257399371.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19156     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1187555..1208468 1193377..1194291 within 0


Gene organization within MGE regions


Location: 1187555..1208468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19156_RS06260 (CLC19156_01232) - 1187555..1188712 (+) 1158 WP_039668725.1 peptidoglycan DD-metalloendopeptidase family protein -
  CLC19156_RS06265 (CLC19156_01233) mgtE 1188714..1190057 (+) 1344 WP_039668726.1 magnesium transporter -
  CLC19156_RS06270 (CLC19156_01234) tpx 1190070..1190588 (+) 519 WP_039668727.1 thiol peroxidase -
  CLC19156_RS06275 (CLC19156_01235) - 1190585..1191970 (-) 1386 WP_257399369.1 replicative DNA helicase -
  CLC19156_RS06280 (CLC19156_01236) cysK 1191983..1192885 (-) 903 WP_257399370.1 cysteine synthase A -
  CLC19156_RS06285 (CLC19156_01237) - 1192983..1193285 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  CLC19156_RS06290 (CLC19156_01238) waaF 1193377..1194291 (-) 915 WP_257399371.1 glycosyltransferase family 9 protein Regulator
  CLC19156_RS06295 (CLC19156_01239) - 1194349..1195164 (+) 816 WP_257399372.1 glycosyltransferase family 2 protein -
  CLC19156_RS06300 (CLC19156_01240) - 1195152..1195892 (+) 741 WP_257399373.1 glycosyltransferase family 25 protein -
  CLC19156_RS06305 (CLC19156_01241) - 1196180..1197388 (+) 1209 WP_410689594.1 glycosyltransferase family 2 protein -
  CLC19156_RS06310 (CLC19156_01242) - 1197392..1198300 (+) 909 WP_306808433.1 glycosyltransferase family 2 protein -
  CLC19156_RS06315 (CLC19156_01243) yibB 1198295..1199233 (-) 939 WP_257399402.1 protein YibB -
  CLC19156_RS06320 (CLC19156_01244) - 1199289..1200284 (+) 996 WP_257399401.1 capsular polysaccharide synthesis protein -
  CLC19156_RS06325 (CLC19156_01245) - 1200268..1201441 (-) 1174 Protein_1225 glycosyltransferase family 2 protein -
  CLC19156_RS06330 (CLC19156_01246) - 1201445..1202992 (-) 1548 WP_410689595.1 glycosyltransferase family 2 protein -
  CLC19156_RS06335 (CLC19156_01247) - 1203001..1203873 (-) 873 WP_257399282.1 lipid A biosynthesis lauroyl acyltransferase -
  CLC19156_RS06340 (CLC19156_01248) waaC 1203870..1204889 (-) 1020 WP_257399283.1 lipopolysaccharide heptosyltransferase I -
  CLC19156_RS06345 (CLC19156_01249) - 1204956..1205735 (+) 780 WP_257399284.1 3'-5' exonuclease -
  CLC19156_RS06350 (CLC19156_01250) galE 1205794..1206780 (+) 987 WP_257399285.1 UDP-glucose 4-epimerase GalE -
  CLC19156_RS06355 (CLC19156_01251) - 1206774..1208468 (+) 1695 WP_240386949.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34755.04 Da        Isoelectric Point: 10.3198

>NTDB_id=1081381 CLC19156_RS06290 WP_257399371.1 1193377..1194291(-) (waaF) [Campylobacter lari subsp. concheus strain RM19156]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKYFENAQILVENKKQRYKQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSNVLKLPIKAKSTQKLLGINAGAHFGSAKRW
EASYFARVAKEFSFTHKILIFGVESEREICDEIEHYLLKEGIKAKNLCGKTNIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAIFGSTKFSQTSPWQKNAKIAHLNLACMPCMQKTCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081381 CLC19156_RS06290 WP_257399371.1 1193377..1194291(-) (waaF) [Campylobacter lari subsp. concheus strain RM19156]
ATGAATATTTTTATCAACCTTCCCACTTGGCTTGGCGATGCGGTGATGGCTAGTGCAGCTATTTATGCTATAAAAGAAAA
ATATCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAATACTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAACAAAGATATAAGCAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTCTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCAACTTCAAATGTTTTAA
AACTCCCTATAAAAGCAAAATCAACTCAAAAACTTTTGGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGTTTTACGCATAAAATTCTAATCTTTGGAGTAGAAAGCGAGAG
AGAAATTTGTGATGAAATTGAACATTATCTTTTAAAAGAAGGCATAAAGGCAAAAAATCTTTGTGGTAAAACTAACATTT
ATACTTTATGTAAAAATATTTCTATGCTTGATTTACTCATCACAAACGATAGTGGTCCTATGCATATAGGTGCAGTTTAT
GGGGTGAAAACAGTAGCTATTTTTGGTTCGACTAAATTTAGTCAAACTTCACCTTGGCAAAAAAATGCTAAAATAGCGCA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGACTTGTCCTTTAAAACATCACAAATGCATGAAAGACTTAAAGCCTG
AAGTGGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.968

100

0.671

Multiple sequence alignment