Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CLC19156_RS01655 Genome accession   NZ_CP176598
Coordinates   293129..294307 (+) Length   392 a.a.
NCBI ID   WP_257399344.1    Uniprot ID   -
Organism   Campylobacter lari subsp. concheus strain RM19156     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 288129..299307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLC19156_RS01640 (CLC19156_00322) cysC 288981..289565 (+) 585 WP_257399347.1 adenylyl-sulfate kinase -
  CLC19156_RS01645 (CLC19156_00323) - 289562..291073 (+) 1512 WP_257399346.1 hypothetical protein -
  CLC19156_RS01650 (CLC19156_00324) - 291105..293132 (+) 2028 WP_257399345.1 capsular polysaccharide biosynthesis protein -
  CLC19156_RS01655 (CLC19156_00325) kpsS 293129..294307 (+) 1179 WP_257399344.1 capsule biosynthesis protein Regulator
  CLC19156_RS01660 (CLC19156_00326) - 294304..295812 (-) 1509 WP_410689602.1 hypothetical protein -
  CLC19156_RS01665 (CLC19156_00327) - 295975..297105 (+) 1131 WP_220516203.1 DUF829 domain-containing protein -
  CLC19156_RS01670 (CLC19156_00328) - 297115..298488 (+) 1374 WP_257399279.1 cytochrome P450 -
  CLC19156_RS01675 (CLC19156_00329) - 298485..298838 (+) 354 WP_039627957.1 membrane protein -

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 46235.77 Da        Isoelectric Point: 10.1410

>NTDB_id=1081371 CLC19156_RS01655 WP_257399344.1 293129..294307(+) (kpsS) [Campylobacter lari subsp. concheus strain RM19156]
MNLSKKLKKFSGKNVLLLQGPVGGFFRKIAIKIPKANVYKVNFNGGDFLFYPFNSINYTKSLAELESFYKKLFEEKQIQV
ILMYNDCRKIHEIAISVAKQMGIEVWIFEEGYIRPNFITFEKDGVNANSTLPREKEFYLSQKKFDKDFKFKTFSSTFKNM
AFASFLYWLFAFLFSWYFNNSLHHRSLKLFDFLPWLCSVYRKNKYKITEKSLNEKILSLKQKYFLAILQVHNDTQLSHHY
KKSTEKFIEEVIISFANHAKAKSYLVFKHHPMDRGYRDYTKLIEDLSLKYNVEGRILYVHDLHLPTLLINARGTIVINST
VGLSALYHNSPLKVIGKAFYDIEGLTYQKSLHTFWKECRAYKPDAVLHAKFRNYVIYKTQVNGNFFKNTSLD

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=1081371 CLC19156_RS01655 WP_257399344.1 293129..294307(+) (kpsS) [Campylobacter lari subsp. concheus strain RM19156]
ATGAATTTAAGTAAGAAGTTAAAAAAATTTTCCGGTAAAAATGTTTTGTTACTCCAAGGGCCTGTGGGAGGATTTTTTCG
CAAAATTGCTATAAAAATTCCAAAAGCTAATGTTTATAAAGTAAATTTTAATGGAGGAGATTTTTTATTTTATCCTTTTA
ATAGTATCAATTACACCAAAAGCTTAGCTGAGCTTGAAAGCTTTTATAAAAAGCTTTTTGAAGAAAAGCAAATTCAAGTT
ATTTTGATGTATAATGATTGTAGAAAAATTCATGAGATAGCCATCAGTGTAGCCAAGCAAATGGGTATTGAAGTGTGGAT
TTTTGAAGAAGGTTATATAAGACCAAACTTCATTACTTTTGAAAAAGATGGGGTAAACGCAAACTCGACCCTACCAAGAG
AAAAAGAATTTTATCTAAGTCAGAAAAAATTTGATAAAGATTTTAAATTTAAAACTTTTTCAAGTACTTTTAAAAATATG
GCTTTTGCTTCGTTTTTATACTGGCTTTTTGCTTTTTTATTTTCTTGGTATTTTAATAATTCTTTACACCATAGAAGTTT
AAAATTATTTGACTTTTTACCTTGGCTTTGTTCGGTATATAGAAAAAACAAATACAAAATCACAGAAAAAAGTTTAAACG
AGAAAATTCTTTCTTTAAAACAAAAGTATTTTTTAGCTATTCTGCAAGTGCATAATGATACTCAACTTTCCCATCATTAT
AAAAAAAGTACAGAAAAATTTATAGAAGAAGTGATTATCTCTTTTGCTAATCATGCCAAAGCAAAGTCTTATCTAGTTTT
TAAGCATCATCCTATGGATCGTGGTTATAGAGACTATACTAAGCTTATAGAAGATTTGAGTTTAAAATATAATGTTGAGG
GTAGAATTTTATATGTACATGACTTGCATTTGCCTACACTTTTGATCAATGCAAGAGGTACTATAGTTATAAATAGCACA
GTAGGACTTTCTGCTTTATATCATAATAGTCCTTTAAAGGTTATAGGAAAAGCCTTTTATGATATAGAAGGTTTAACTTA
CCAAAAAAGCTTGCATACTTTTTGGAAAGAATGCAGAGCATATAAACCTGATGCGGTTTTACATGCTAAATTTAGAAATT
ATGTAATATATAAAACCCAAGTCAATGGAAATTTCTTCAAAAATACTAGTTTAGATTAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(80-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.532

100

0.63

Multiple sequence alignment