Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   UPTC17453_RS06615 Genome accession   NZ_CP176596
Coordinates   1275571..1276485 (-) Length   304 a.a.
NCBI ID   WP_039642102.1    Uniprot ID   -
Organism   Campylobacter lari strain RM17453     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270571..1281485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UPTC17453_RS06590 (UPTC17453_01296) mgtE 1270909..1272252 (+) 1344 WP_039642095.1 magnesium transporter -
  UPTC17453_RS06595 (UPTC17453_01297) tpx 1272265..1272783 (+) 519 WP_039642096.1 thiol peroxidase -
  UPTC17453_RS06600 (UPTC17453_01298) - 1272780..1274165 (-) 1386 WP_039642098.1 replicative DNA helicase -
  UPTC17453_RS06605 (UPTC17453_01299) cysK 1274178..1275080 (-) 903 WP_039642100.1 cysteine synthase A -
  UPTC17453_RS06610 (UPTC17453_01300) - 1275176..1275478 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  UPTC17453_RS06615 (UPTC17453_01301) waaF 1275571..1276485 (-) 915 WP_039642102.1 lipopolysaccharide heptosyltransferase II Regulator
  UPTC17453_RS06620 (UPTC17453_01302) - 1276538..1277344 (+) 807 WP_039642104.1 glycosyltransferase family 2 protein -
  UPTC17453_RS06625 (UPTC17453_01303) - 1277327..1278523 (-) 1197 WP_039642106.1 hypothetical protein -
  UPTC17453_RS06630 (UPTC17453_01304) - 1278522..1279421 (+) 900 WP_039642108.1 glycosyltransferase family 2 protein -
  UPTC17453_RS06635 (UPTC17453_01305) - 1279393..1280454 (-) 1062 WP_373274538.1 beta-1,4-N-acetylgalactosaminyltransferase -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34565.84 Da        Isoelectric Point: 10.3086

>NTDB_id=1081346 UPTC17453_RS06615 WP_039642102.1 1275571..1276485(-) (waaF) [Campylobacter lari strain RM17453]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKCFENAKILVENKKQRYKQILQARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALSFKVTSNALKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFARVAKEFSLTHQILIFGVESEREICNEIERFLLKEGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAAY
GVKTVAVFGSTKFSQTSPWQENAKIAHLNLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKTFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=1081346 UPTC17453_RS06615 WP_039642102.1 1275571..1276485(-) (waaF) [Campylobacter lari strain RM17453]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGCGATGCGGTGATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCCAAGCTAAATTTACTTTTTATGGTTCTTTTGTGAGTACAGAGCTTTTTAAGTGTTTTGAAAATGCTAAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAAGCAAATTTTACAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCG
TTTCGCTCAGCATTTTCAAGCAAGATCATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATTCT
AAAAGAAGAACACCAAGTCTTAAAATACTTAAATTTTATAGAAAAAGCTTTAAGTTTTAAAGTCACTTCAAATGCTTTAA
AGCTTCCTATAAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCGCATTTTGGAAGTGCGAAAAGATGG
GAAGCGAGCTATTTTGCAAGGGTGGCAAAAGAATTTAGCCTCACGCATCAAATTTTAATTTTTGGGGTAGAAAGTGAGAG
AGAAATTTGTAATGAAATTGAGCGTTTTCTTTTAAAAGAAGGCATAAAAGCAAAAAATCTTTGTGGTAAAACTAGCATTT
ATACTTTATGTAAAAATATTTCTATGCTTGACTTGCTCATCACAAACGATAGTGGTCCTATGCATATAGGCGCAGCTTAT
GGGGTAAAAACGGTGGCTGTTTTTGGCTCGACTAAATTTAGTCAAACCTCACCTTGGCAAGAAAATGCTAAAATAGCACA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAGGTCTGTCCTTTAAAACACCACAAATGCATGAAAGACTTAAAGCCTG
AAGTAGTAATAAATTTAGCAAAAACATTTTTTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(140-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.287

100

0.674

Multiple sequence alignment